Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8620_RS06665 Genome accession   NZ_AP028369
Coordinates   1289641..1290156 (+) Length   171 a.a.
NCBI ID   WP_052804886.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10666     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1284641..1295156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8620_RS06640 (B10666_13190) - 1285100..1285438 (+) 339 WP_002855905.1 hypothetical protein -
  R8620_RS06645 (B10666_13200) cdsA 1285447..1286172 (+) 726 WP_002927449.1 phosphatidate cytidylyltransferase -
  R8620_RS06650 (B10666_13210) dxr 1286169..1287239 (+) 1071 WP_052804889.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8620_RS06655 (B10666_13220) - 1287241..1288636 (+) 1396 Protein_1292 M99 family carboxypeptidase catalytic domain-containing protein -
  R8620_RS06660 (B10666_13240) tsaD 1288633..1289640 (+) 1008 WP_052804887.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8620_RS06665 (B10666_13250) ctsG 1289641..1290156 (+) 516 WP_052804886.1 type II secretion system protein Machinery gene
  R8620_RS06670 (B10666_13260) - 1290156..1291394 (+) 1239 WP_052804885.1 DUF2920 family protein -
  R8620_RS06675 (B10666_13270) - 1291461..1293182 (+) 1722 WP_052804884.1 flagellin A -
  R8620_RS06680 (B10666_13280) - 1293339..1295069 (+) 1731 WP_052804844.1 flagellin A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18719.57 Da        Isoelectric Point: 6.4683

>NTDB_id=104948 R8620_RS06665 WP_052804886.1 1289641..1290156(+) (ctsG) [Campylobacter jejuni strain BCH-10666]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKILINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQNHEDLENVDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104948 R8620_RS06665 WP_052804886.1 1289641..1290156(+) (ctsG) [Campylobacter jejuni strain BCH-10666]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATCTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAATTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAATGCAGCCAATCAAAACCATGAAGATT
TAGAAAATGTAGATTTTACGAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947

Multiple sequence alignment