Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB3U57_RS21515 Genome accession   NZ_CP168976
Coordinates   4204669..4205448 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain QKG-2024     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 4179376..4241135 4204669..4205448 within 0


Gene organization within MGE regions


Location: 4179376..4241135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U57_RS21405 (AB3U57_21405) - 4179946..4180845 (-) 900 WP_000868217.1 polysaccharide deacetylase family protein -
  AB3U57_RS21410 (AB3U57_21410) pnp 4180997..4183135 (-) 2139 WP_000076737.1 polyribonucleotide nucleotidyltransferase -
  AB3U57_RS21415 (AB3U57_21415) rpsO 4183296..4183565 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  AB3U57_RS21420 (AB3U57_21420) ribF 4183666..4184637 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  AB3U57_RS21425 (AB3U57_21425) truB 4184681..4185604 (-) 924 WP_000399352.1 tRNA pseudouridine(55) synthase TruB -
  AB3U57_RS21430 (AB3U57_21430) rbfA 4185691..4186047 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  AB3U57_RS21435 (AB3U57_21435) - 4186063..4186344 (-) 282 WP_000582363.1 DUF503 domain-containing protein -
  AB3U57_RS21440 (AB3U57_21440) infB 4186341..4188401 (-) 2061 WP_065382194.1 translation initiation factor IF-2 -
  AB3U57_RS21445 (AB3U57_21445) - 4188406..4188717 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  AB3U57_RS21450 (AB3U57_21450) rnpM 4188718..4188990 (-) 273 WP_000071127.1 RNase P modulator RnpM -
  AB3U57_RS21455 (AB3U57_21455) nusA 4189002..4190108 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  AB3U57_RS21460 (AB3U57_21460) rimP 4190126..4190596 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  AB3U57_RS21465 (AB3U57_21465) - 4190933..4195234 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  AB3U57_RS21470 (AB3U57_21470) - 4195359..4197059 (-) 1701 WP_000814299.1 proline--tRNA ligase -
  AB3U57_RS21475 (AB3U57_21475) rseP 4197169..4198425 (-) 1257 WP_001090244.1 RIP metalloprotease RseP -
  AB3U57_RS21480 (AB3U57_21480) dxr 4198443..4199585 (-) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AB3U57_RS21485 (AB3U57_21485) cdsA 4199609..4200400 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  AB3U57_RS21490 (AB3U57_21490) uppS 4200418..4201194 (-) 777 WP_000971296.1 isoprenyl transferase -
  AB3U57_RS21495 (AB3U57_21495) frr 4201280..4201837 (-) 558 WP_000531501.1 ribosome recycling factor -
  AB3U57_RS21500 (AB3U57_21500) pyrH 4201840..4202562 (-) 723 WP_000042668.1 UMP kinase -
  AB3U57_RS21505 (AB3U57_21505) tsf 4202629..4203516 (-) 888 WP_001018578.1 translation elongation factor Ts -
  AB3U57_RS21510 (AB3U57_21510) rpsB 4203620..4204321 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  AB3U57_RS21515 (AB3U57_21515) codY 4204669..4205448 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB3U57_RS21520 (AB3U57_21520) hslU 4205526..4206917 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  AB3U57_RS21525 (AB3U57_21525) hslV 4206940..4207482 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  AB3U57_RS21530 (AB3U57_21530) xerC 4207525..4208424 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  AB3U57_RS21535 (AB3U57_21535) trmFO 4208490..4209794 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB3U57_RS21540 (AB3U57_21540) topA 4209843..4211921 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  AB3U57_RS21545 (AB3U57_21545) dprA 4212066..4212935 (-) 870 WP_000818059.1 DNA-processing protein DprA -
  AB3U57_RS21550 (AB3U57_21550) sucD 4213024..4213926 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  AB3U57_RS21555 (AB3U57_21555) sucC 4213946..4215106 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  AB3U57_RS21560 (AB3U57_21560) - 4215301..4216074 (-) 774 WP_001194265.1 ribonuclease HII -
  AB3U57_RS21565 (AB3U57_21565) ylqF 4216131..4217021 (-) 891 WP_000236704.1 ribosome biogenesis GTPase YlqF -
  AB3U57_RS21570 (AB3U57_21570) lepB 4217042..4217593 (-) 552 WP_000711853.1 signal peptidase I -
  AB3U57_RS21575 (AB3U57_21575) rplS 4217695..4218039 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  AB3U57_RS21580 (AB3U57_21580) trmD 4218186..4218920 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AB3U57_RS21585 (AB3U57_21585) rimM 4218920..4219435 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  AB3U57_RS21590 (AB3U57_21590) - 4219557..4219784 (-) 228 WP_000737401.1 KH domain-containing protein -
  AB3U57_RS21595 (AB3U57_21595) rpsP 4219799..4220071 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  AB3U57_RS21600 (AB3U57_21600) ffh 4220173..4221522 (-) 1350 WP_000863460.1 signal recognition particle protein -
  AB3U57_RS21605 (AB3U57_21605) - 4221535..4221867 (-) 333 WP_000891062.1 putative DNA-binding protein -
  AB3U57_RS21610 (AB3U57_21610) ftsY 4222001..4222990 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  AB3U57_RS21615 (AB3U57_21615) smc 4223006..4226575 (-) 3570 WP_000478978.1 chromosome segregation protein SMC -
  AB3U57_RS21620 (AB3U57_21620) rncS 4226722..4227459 (-) 738 WP_001146875.1 ribonuclease III -
  AB3U57_RS21625 (AB3U57_21625) acpP 4227518..4227751 (-) 234 WP_000786062.1 acyl carrier protein -
  AB3U57_RS21630 (AB3U57_21630) fabG 4227821..4228561 (-) 741 WP_000911773.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  AB3U57_RS21635 (AB3U57_21635) fabD 4228561..4229505 (-) 945 WP_000515899.1 ACP S-malonyltransferase -
  AB3U57_RS21640 (AB3U57_21640) plsX 4229520..4230512 (-) 993 WP_000684100.1 phosphate acyltransferase PlsX -
  AB3U57_RS21645 (AB3U57_21645) fapR 4230509..4231102 (-) 594 WP_000747348.1 transcription factor FapR -
  AB3U57_RS21650 (AB3U57_21650) recG 4231191..4233239 (-) 2049 WP_065212076.1 ATP-dependent DNA helicase RecG -
  AB3U57_RS21655 (AB3U57_21655) - 4233530..4235206 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  AB3U57_RS21660 (AB3U57_21660) - 4235229..4235591 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  AB3U57_RS21665 (AB3U57_21665) rpmB 4235968..4236156 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  AB3U57_RS21670 (AB3U57_21670) spoVM 4236230..4236310 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  AB3U57_RS21675 (AB3U57_21675) - 4236377..4237057 (-) 681 WP_000752665.1 thiamine diphosphokinase -
  AB3U57_RS21680 (AB3U57_21680) rpe 4237127..4237771 (-) 645 WP_065212077.1 ribulose-phosphate 3-epimerase -
  AB3U57_RS21685 (AB3U57_21685) rsgA 4237774..4238655 (-) 882 WP_065212078.1 ribosome small subunit-dependent GTPase A -
  AB3U57_RS21690 (AB3U57_21690) pknB 4238902..4240875 (-) 1974 WP_000904747.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=1049146 AB3U57_RS21515 WP_000421290.1 4204669..4205448(-) (codY) [Bacillus cereus strain QKG-2024]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1049146 AB3U57_RS21515 WP_000421290.1 4204669..4205448(-) (codY) [Bacillus cereus strain QKG-2024]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment