Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AB2Q85_RS08585 Genome accession   NZ_CP168923
Coordinates   1650317..1652713 (-) Length   798 a.a.
NCBI ID   WP_003723695.1    Uniprot ID   A0A456F8X7
Organism   Listeria monocytogenes strain N19-1094     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1645317..1657713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2Q85_RS08565 (AB2Q85_08555) - 1645777..1646472 (-) 696 WP_003723691.1 ABC transporter ATP-binding protein -
  AB2Q85_RS08570 (AB2Q85_08560) - 1646481..1647986 (-) 1506 WP_003723692.1 ABC transporter permease -
  AB2Q85_RS08575 (AB2Q85_08565) pieR 1648153..1648839 (+) 687 WP_003723693.1 two component system response regulator PieR -
  AB2Q85_RS08580 (AB2Q85_08570) pieS 1648836..1650275 (+) 1440 WP_010990146.1 two component system sensor histidine kinase PieS -
  AB2Q85_RS08585 (AB2Q85_08575) recD2 1650317..1652713 (-) 2397 WP_003723695.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB2Q85_RS08590 (AB2Q85_08580) - 1652741..1653379 (-) 639 WP_010990147.1 tetratricopeptide repeat protein -
  AB2Q85_RS08595 (AB2Q85_08585) - 1653420..1654159 (-) 740 Protein_1693 alpha/beta hydrolase -
  AB2Q85_RS08600 (AB2Q85_08590) mnmA 1654277..1655392 (-) 1116 WP_085297321.1 tRNA 2-thiouridine(34) synthase MnmA -
  AB2Q85_RS08605 (AB2Q85_08595) - 1655411..1656559 (-) 1149 WP_003723699.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90097.15 Da        Isoelectric Point: 4.7816

>NTDB_id=1048701 AB2Q85_RS08585 WP_003723695.1 1650317..1652713(-) (recD2) [Listeria monocytogenes strain N19-1094]
MAEQESLALFDDTTEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEILLGEVTYLLEESEGIRIDQSILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGDTKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMVG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1048701 AB2Q85_RS08585 WP_003723695.1 1650317..1652713(-) (recD2) [Listeria monocytogenes strain N19-1094]
ATGGCTGAACAAGAATCACTCGCCTTATTTGATGATACAACGGAAGAACTTTTCATGAAGGGCACGATGTTGTCTACCAT
TTTTTACAATGCCGAAAACCTCTTTTCTGTCGTACGAATATTGGTAAAAGAAACAAATGCGGATTGGGACGAAAAAGATA
TTATCGTAACTGGCTTTTTCCCAGCACTCCACGAACAAGAAGTCTACACTTTCTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAACAATTCAAAGCAGACCGGTTTCGTAAAGAAATGCCACAATCACGCGCTGGTTTAATTAATTATCTTTCTGG
AGAACTTTTTAAAGGAATTGGTAAAGTAACCGCTGAAAATATTGTGGATACGATTGGCGATGATGCTATTACGAAAATTT
TATCCGATCCGAGTTTGTTAAACACGGTACCTAAGTTGCCATCCGGTGCAGCGGAAAGTTTGCTTGCTTCTCTTAGAGAA
AATCAGGGATTAGAGCATGTGATGGTCGGTTTAAACGAATATGGCTTTGGCCCGCAATTATCCATGAAAATTTTCCAGGC
CTATAAACAAAATGCTATTGAAGTGTTAGAGAATAATCCTTATAAATTGATTGAGGACGTAAAAGGGATTGGTTTTCAGC
GTGCCGATGAGCTTGGACGGAAACTCGGTCTTGGCGGGAATCATCCAGAACGGCTTCGCGCAGGGATTTTATTTATGTTA
GATTCGGTTTGTATGCAACAAGGTCACGTATACATGGAGCAAGAGATTCTGCTTGGAGAAGTGACATATTTGCTAGAAGA
AAGTGAAGGCATTCGAATTGACCAAAGTATTTTAGTAGCTCAAGTAGAAAAATTGGCCGAGGAACAAAAGATTATTACGG
AAAACACACGCGTATACATGCCATCGCTCTATTATTCAGAGAGTGGCTTTGCATATCATGTGAAGCGAATGCTTAAACAA
ACAGAATACCAAGAACAATTTCCACAATCCGAATTTTTACTAGCTCTAGGAGAATTAGAAGAAAGGATTGGCGTTCATTA
CGGAGACTCACAACGACAGGCTTTAGAACAAGCTTTAATGTCTCCGATGCTCGTACTTACTGGTGGTCCTGGAACAGGGA
AAACAACGGTCATTAAAGGGATAGTGGAGCTGTATGCGGAACTAAATGGTGTGAGTCTTGATCCCCATGCTTACAAAGAT
GGAGCGACTTTCCCCGTTCTTCTTGCTGCTCCAACTGGTCGTGCCGCTAAACGGATGTCAGAGTCAACTGGACTTCCTGC
GATGACTATTCACCGTCTACTCGGAATGAATGGTCAAGAACAAATGGATGATGATGCAGAAAGACTGATTGATGGACGAC
TGTTGATTGTGGATGAGATGTCGATGGTTGATATTTGGCTTGCTAATCAATTATTCCGTGCTTTACCAGCGCACATGCAA
GTGGTACTCGTTGGCGACCAAGATCAGTTGCCTTCAGTCGGACCGGGTCAAGTACTCAAAGATATTCTGCAATCTGAACA
AATTCCAACTGTAGCTCTTTCAGATATTTATCGCCAAAAGGATGGTTCTTCCATTATCGAAATGGCGCATTATATAAAAG
AAGGCATGTTGCCAGCTGATTTCACCAAAAATAGCGCCGATCGCTCCTTTTTTCATTGCACGGTAAATCAAATTGGTGAT
GTGGTCGAACAAGTGGTAAAAAATGCAAAAAACAAAGGGTTTCGAGCAAAAGATATCCAAGTTTTAGCACCAATGTATCG
TGGTCCCGCAGGCATTGATATTTTAAATAAAAAACTACAAGAAATCTTCAATCCAAATGATACAGGGCGTCGTAAAGAAG
TTCAATTCGGTGACACAAAGTATCGCGTGCATGACAAAGTACTGCAATTGATTAATCAACCAGAGAAAAATGTGTTTAAC
GGTGATATCGGTGAAATTGTTTCTATAATCTACGCCAAAGAAAATACCGAAAAACAAGATCTGATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTACTATAGGCAAGAATTTAATCAATTGACCCATGCTTATTGTTGTTCGATTCATAAAGCGCAGG
GAAGTGAATTTCCGATTGTGATTATGCCGATTGTCCGCAGTTACTACCGGATGTTACGTCGCGATTTACTCTACACTGGA
GTAACGCGGAGTAAACAATTTCTCATTCTTTGTGGGGAAGAAGAAGCTTTTCGAATGGGGATAGAACGAATTGATGAAAA
TAAGCGTAATACGACACTCTCTGAACGTTTAATGAGCGAAGATGTTTTATTAGAACAAATGACGAATAAACGAATTCTCA
CTGCTGAAAACATTACGGAAATTGATCCGATGATTGGAATGGAAGGGATTACTCCAGAACAGTTTATGGTAGGATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(347-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A456F8X7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.36

98.747

0.566

Multiple sequence alignment