Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8617_RS06870 Genome accession   NZ_AP028362
Coordinates   1330361..1330876 (-) Length   171 a.a.
NCBI ID   WP_002868456.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10611     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1325361..1335876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8617_RS06855 (B10611_13540) - 1325473..1327290 (-) 1818 WP_125975170.1 motility associated factor glycosyltransferase family protein -
  R8617_RS06860 (B10611_13550) - 1327287..1329110 (-) 1824 WP_125975174.1 motility associated factor glycosyltransferase family protein -
  R8617_RS06865 (B10611_13560) - 1329120..1330361 (-) 1242 WP_044260698.1 DUF2920 family protein -
  R8617_RS06870 (B10611_13570) ctsG 1330361..1330876 (-) 516 WP_002868456.1 type II secretion system protein Machinery gene
  R8617_RS06875 (B10611_13580) tsaD 1330877..1331884 (-) 1008 WP_002884179.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8617_RS06880 (B10611_13590) - 1331881..1333275 (-) 1395 WP_002853606.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8617_RS06885 (B10611_13600) dxr 1333277..1334347 (-) 1071 WP_234729012.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8617_RS06890 (B10611_13610) cdsA 1334344..1335069 (-) 726 WP_002884177.1 phosphatidate cytidylyltransferase -
  R8617_RS06895 (B10611_13620) - 1335078..1335416 (-) 339 WP_002875268.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18704.64 Da        Isoelectric Point: 6.4682

>NTDB_id=104838 R8617_RS06870 WP_002868456.1 1330361..1330876(-) (ctsG) [Campylobacter jejuni strain BCH-10611]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGILSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104838 R8617_RS06870 WP_002868456.1 1330361..1330876(-) (ctsG) [Campylobacter jejuni strain BCH-10611]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTTAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment