Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABNR97_RS03285 Genome accession   NZ_OZ021676
Coordinates   639165..639830 (-) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-001     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634165..644830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR97_RS03250 dut 634780..635232 (-) 453 WP_103195211.1 dUTP diphosphatase -
  ABNR97_RS03255 - 635398..636105 (+) 708 Protein_641 AzlC family ABC transporter permease -
  ABNR97_RS03260 - 636102..636410 (+) 309 WP_010951048.1 AzlD family protein -
  ABNR97_RS03265 pilL 636480..636953 (-) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  ABNR97_RS03270 pilK 636955..637566 (-) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABNR97_RS03275 pilJ 637545..638525 (-) 981 WP_010951046.1 PilW family protein Machinery gene
  ABNR97_RS03280 pilV 638522..639133 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Regulator
  ABNR97_RS03285 pilH 639165..639830 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABNR97_RS03290 dnaB 639985..641391 (-) 1407 WP_047917169.1 replicative DNA helicase -
  ABNR97_RS03295 - 641555..642136 (+) 582 WP_047923823.1 superoxide dismutase -
  ABNR97_RS03300 - 642368..642877 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ABNR97_RS03305 - 643208..643540 (-) 333 WP_003687908.1 hypothetical protein -
  ABNR97_RS03310 cysT 643726..644555 (+) 830 Protein_652 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=1048064 ABNR97_RS03285 WP_047918678.1 639165..639830(-) (pilH) [Neisseria gonorrhoeae isolate SGC-23-001]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1048064 ABNR97_RS03285 WP_047918678.1 639165..639830(-) (pilH) [Neisseria gonorrhoeae isolate SGC-23-001]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869