Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AB2Q99_RS07915 Genome accession   NZ_CP168891
Coordinates   1560060..1562456 (-) Length   798 a.a.
NCBI ID   WP_003732598.1    Uniprot ID   A0A5D5SBW6
Organism   Listeria monocytogenes strain N21-1043     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1555060..1567456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2Q99_RS07895 (AB2Q99_07905) - 1555520..1556215 (-) 696 WP_009933367.1 ABC transporter ATP-binding protein -
  AB2Q99_RS07900 (AB2Q99_07910) - 1556224..1557729 (-) 1506 WP_014601443.1 ABC transporter permease -
  AB2Q99_RS07905 (AB2Q99_07915) pieR 1557896..1558582 (+) 687 WP_003723693.1 two component system response regulator PieR -
  AB2Q99_RS07910 (AB2Q99_07920) pieS 1558579..1560018 (+) 1440 WP_010990146.1 two component system sensor histidine kinase PieS -
  AB2Q99_RS07915 (AB2Q99_07925) recD2 1560060..1562456 (-) 2397 WP_003732598.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB2Q99_RS07920 (AB2Q99_07930) - 1562484..1563122 (-) 639 WP_010990147.1 tetratricopeptide repeat protein -
  AB2Q99_RS07925 (AB2Q99_07935) - 1563163..1563903 (-) 741 WP_010990148.1 alpha/beta hydrolase -
  AB2Q99_RS07930 (AB2Q99_07940) mnmA 1564021..1565136 (-) 1116 WP_003723698.1 tRNA 2-thiouridine(34) synthase MnmA -
  AB2Q99_RS07935 (AB2Q99_07945) - 1565155..1566303 (-) 1149 WP_010990149.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90095.17 Da        Isoelectric Point: 4.7816

>NTDB_id=1047970 AB2Q99_RS07915 WP_003732598.1 1560060..1562456(-) (recD2) [Listeria monocytogenes strain N21-1043]
MAEQESLALFDDTTEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQSILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGDIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMVG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1047970 AB2Q99_RS07915 WP_003732598.1 1560060..1562456(-) (recD2) [Listeria monocytogenes strain N21-1043]
ATGGCTGAACAAGAATCACTCGCCTTATTTGATGATACAACGGAAGAACTTTTCATGAAGGGCACGATGTTGTCTACCAT
TTTTTACAATGCCGAAAACCTCTTTTCTGTCGTACGAATATTGGTAAAAGAAACAAATGCGGATTGGGACGAAAAAGATA
TTATCGTAACTGGCTTTTTCCCAGCACTCCACGAACAAGAAGTCTACACTTTCTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAACAATTCAAAGCAGACCGGTTTCGTAAAGAAATGCCACAATCACGCGCTGGTTTAATTAATTATCTTTCTGG
AGAACTTTTTAAAGGAATTGGTAAAGTAACCGCTGAAAATATTGTGGATACGATTGGCGATGATGCTATTACGAAAATTT
TATCCGATCCGAGTTTGTTAAACACGGTACCTAAGTTGCCATCCGGTGCAGCGGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAGGGATTAGAGCATGTGATGGTCGGTTTAAACGAATATGGCTTTGGCCCGCAATTATCCATGAAAATTTTCCAGGC
CTATAAACAAAATGCTATTGAAGTGTTAGAGAATAATCCTTATAAATTGATTGAGGACGTAAAAGGGATTGGTTTTCAGC
GTGCCGATGAGCTTGGACGGAAACTCGGTCTTGGCGGGAATCATCCAGAACGGCTTCGCGCAGGGATTTTATTTATGTTA
GATTCGGTTTGTATGCAACAAGGTCACGTATACATGGAGCAAGAGGTTCTGCTTGGAGAAGTGACATATTTGCTAGAAGA
AAGTGAAGGCATTCGAATTGACCAAAGTATTTTAGTAGCTCAAGTAGAAAAATTGGCCGAGGAACAAAAGATTATTACGG
AAAACACACGCGTATACATGCCATCGCTCTATTATTCAGAGAGTGGCTTTGCATATCATGTGAAGCGAATGCTTAAACAA
ACAGAATACCAAGAACAATTTCCACAATCCGAATTTTTACTAGCTCTAGGAGAATTAGAAGAAAGGATTGGCGTTCATTA
CGGAGACTCACAACGACAGGCTTTAGAACAAGCTTTAATGTCTCCGATGCTCGTACTTACTGGTGGTCCTGGAACAGGGA
AAACAACGGTCATTAAAGGGATAGTGGAGCTGTATGCGGAACTAAATGGTGTGAGTCTTGATCCCCATGCTTACAAAGAT
GGAGCGACTTTCCCCGTTCTTCTTGCTGCTCCAACTGGTCGTGCCGCTAAACGGATGTCAGAGTCAACTGGACTTCCTGC
GATGACTATTCACCGTCTACTCGGAATGAATGGTCAAGAACAAATGGATGATGATGCAGAAAGACTGATTGATGGACGAC
TGTTGATTGTGGATGAGATGTCGATGGTTGATATTTGGCTTGCTAATCAATTATTCCGTGCTTTACCAGCGCACATGCAA
GTGGTACTCGTTGGCGACCAAGATCAGTTGCCTTCAGTCGGACCGGGTCAAGTACTCAAAGATATTCTGCAATCTGAACA
AATTCCAACTGTAGCTCTTTCAGATATTTATCGCCAAAAGGATGGTTCTTCCATTATCGAAATGGCGCATTATATAAAAG
AAGGCATGTTGCCAGCTGATTTCACCAAAAATAGCGCCGATCGCTCCTTTTTTCATTGCACGGTAAATCAAATTGGTGAT
GTGGTCGAACAAGTGGTAAAAAATGCAAAAAACAAAGGGTTTCGAGCAAAAGATATCCAAGTTTTAGCACCAATGTATCG
TGGTCCCGCAGGCATTGATATTTTAAATAAAAAACTACAAGAAATCTTCAATCCAAATGATACAGGGCGTCGTAAAGAAG
TTCAATTCGGTGACATAAAGTATCGCGTGCATGACAAAGTACTGCAATTGATTAATCAACCAGAGAAAAATGTGTTTAAC
GGTGATATCGGTGAAATTGTTTCTATAATCTACGCCAAAGAAAATACCGAAAAACAAGATCTGATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTACTATAGGCAAGAATTTAATCAATTGACCCATGCTTATTGTTGTTCGATTCATAAAGCGCAGG
GAAGTGAATTTCCGATTGTGATTATGCCGATTGTCCGCAGTTACTACCGGATGTTGCGTCGCGATTTACTCTACACTGGA
GTAACGCGGAGTAAACAATTTCTCATTCTTTGCGGGGAAGAAGAAGCTTTTCGAATGGGGATAGAACGAATTGATGAAAA
TAAGCGTAATACAACACTCTCTGAACGTTTAATGAGCGAAGATGTTTTATTAGAACAAATGACGAATAAACGAATTCTCA
CTGCTGAAAACATTACGGAAATTGATCCGATGATTGGAATGGAAGGGATTACTCCAGAACAGTTTATGGTAGGATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(347-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D5SBW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.36

98.747

0.566

Multiple sequence alignment