Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8607_RS06880 Genome accession   NZ_AP028360
Coordinates   1325838..1326353 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain BCH-10579     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320838..1331353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8607_RS06865 (B10579_13510) - 1320940..1322760 (-) 1821 WP_052794584.1 motility associated factor glycosyltransferase family protein -
  R8607_RS06870 (B10579_13520) - 1322757..1324580 (-) 1824 WP_052819931.1 motility associated factor glycosyltransferase family protein -
  R8607_RS06875 - 1324590..1325838 (-) 1249 Protein_1330 DUF2920 family protein -
  R8607_RS06880 (B10579_13550) ctsG 1325838..1326353 (-) 516 WP_002799196.1 type II secretion system protein Machinery gene
  R8607_RS06885 (B10579_13560) tsaD 1326354..1327361 (-) 1008 WP_052778615.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8607_RS06890 (B10579_13570) - 1327358..1328752 (-) 1395 WP_002860793.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8607_RS06895 (B10579_13580) dxr 1328754..1329824 (-) 1071 WP_002860792.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8607_RS06900 (B10579_13590) cdsA 1329821..1330546 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  R8607_RS06905 (B10579_13600) - 1330555..1330893 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=104786 R8607_RS06880 WP_002799196.1 1325838..1326353(-) (ctsG) [Campylobacter jejuni strain BCH-10579]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104786 R8607_RS06880 WP_002799196.1 1325838..1326353(-) (ctsG) [Campylobacter jejuni strain BCH-10579]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment