Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8564_RS07430 Genome accession   NZ_AP028359
Coordinates   1422612..1423127 (-) Length   171 a.a.
NCBI ID   WP_002875272.1    Uniprot ID   A0A5T0KSE7
Organism   Campylobacter jejuni strain BCH-10570     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1417612..1428127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8564_RS07415 (B10570_14840) - 1417724..1419541 (-) 1818 WP_317649291.1 motility associated factor glycosyltransferase family protein -
  R8564_RS07420 (B10570_14850) - 1419541..1421361 (-) 1821 WP_317649292.1 motility associated factor glycosyltransferase family protein -
  R8564_RS07425 (B10570_14860) - 1421371..1422612 (-) 1242 WP_317649293.1 DUF2920 family protein -
  R8564_RS07430 (B10570_14870) ctsG 1422612..1423127 (-) 516 WP_002875272.1 type II secretion system protein Machinery gene
  R8564_RS07435 (B10570_14880) tsaD 1423128..1424135 (-) 1008 WP_071311303.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8564_RS07440 (B10570_14890) - 1424132..1425526 (-) 1395 WP_317649296.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8564_RS07445 (B10570_14900) dxr 1425528..1426598 (-) 1071 WP_002873627.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8564_RS07450 (B10570_14910) cdsA 1426595..1427320 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  R8564_RS07455 (B10570_14920) - 1427329..1427667 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18650.51 Da        Isoelectric Point: 6.4682

>NTDB_id=104758 R8564_RS07430 WP_002875272.1 1422612..1423127(-) (ctsG) [Campylobacter jejuni strain BCH-10570]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104758 R8564_RS07430 WP_002875272.1 1422612..1423127(-) (ctsG) [Campylobacter jejuni strain BCH-10570]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGCAATGTAAGTGGGGTTGAAAATGTTGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0KSE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment