Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   U8955_RS02945 Genome accession   NZ_OY769914
Coordinates   570774..571562 (+) Length   262 a.a.
NCBI ID   WP_004246012.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 565774..576562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS02930 (SDENT7746_02935) - 565892..566647 (-) 756 WP_038804909.1 hypothetical protein -
  U8955_RS02935 (SDENT7746_02940) - 567252..568568 (-) 1317 WP_038804910.1 FAD-containing oxidoreductase -
  U8955_RS02940 (SDENT7746_02945) - 568916..570493 (+) 1578 WP_038804912.1 DEAD/DEAH box helicase -
  U8955_RS02945 (SDENT7746_02950) codY 570774..571562 (+) 789 WP_004246012.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  U8955_RS02950 (SDENT7746_02955) - 571562..572137 (+) 576 WP_038804914.1 cysteine hydrolase family protein -
  U8955_RS02960 (SDENT7746_02965) - 572572..573849 (+) 1278 WP_038804915.1 ABC transporter permease -
  U8955_RS02965 (SDENT7746_02970) vex2 573862..574494 (+) 633 WP_038804916.1 ABC transporter ATP-binding subunit Vex2 -
  U8955_RS02970 (SDENT7746_02975) vex3 574780..576159 (+) 1380 WP_000902987.1 ABC transporter permease subunit Vex3 -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29708.02 Da        Isoelectric Point: 5.2441

>NTDB_id=1047500 U8955_RS02945 WP_004246012.1 570774..571562(+) (codY) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MAHLLEKTRKITSILKRSEEQMQDELPYNAITRQLADIIDCNACIVNSKGRLLGYFMRYKTNTDRVEQFFQTKTFPDDYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILSELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1047500 U8955_RS02945 WP_004246012.1 570774..571562(+) (codY) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGGCACATTTATTAGAAAAAACAAGAAAAATTACATCAATTTTAAAACGCTCAGAAGAGCAAATGCAGGATGAACTTCC
ATACAATGCCATTACACGTCAACTAGCAGACATTATTGATTGCAATGCCTGTATTGTCAATAGCAAGGGCCGTCTTTTGG
GCTACTTTATGCGCTATAAAACTAATACAGACCGTGTAGAGCAGTTTTTCCAAACCAAGACGTTCCCAGATGACTATGTA
CAAGGGGCAAACATGATCTATGATACAGAAGCCAATCTTCCTGTTGAACATGATTTGACCATTTTTCCTGTAGAGAGCCG
TGCGGATTTTCCAGATGGTTTGACAACCATTGCTCCCATTCATGTATCAGGGATTCGCCTAGGTTCCTTGATCATTTGGC
GCAATGATAAGAAATTTGAAGATGAGGATTTGATTCTTGTTGAGATTGCGAGCACGGTTGTGGGGATTCAACTCTTGAAC
TTCCAACGTGAAGAAGATGAGAAAAATATCCGTCGTCGTACGGCTGTCACCATGGCAGTTAATACCCTTTCCTACTCAGA
ACTTCGTGCTGTTTCAGCTATTTTATCTGAGCTAAATGGAAATGAAGGACAATTAACTGCATCGGTCATTGCAGATCGTA
TCGGTATCACGCGCTCAGTGATCGTCAATGCTCTCCGTAAGCTAGAGTCGGCAGGAATTATTGAAAGCCGTTCACTAGGA
ATGAAGGGAACCTATCTCAAAGTATTGATTTCAGATATCTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

49.187

93.893

0.462