Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8950_RS06885 Genome accession   NZ_AP028355
Coordinates   1340984..1341499 (-) Length   171 a.a.
NCBI ID   WP_227562097.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10539     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1335984..1346499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8950_RS06870 (B10539_13600) - 1336096..1337913 (-) 1818 WP_317725285.1 motility associated factor glycosyltransferase family protein -
  R8950_RS06875 (B10539_13610) - 1337910..1339733 (-) 1824 WP_317725286.1 motility associated factor glycosyltransferase family protein -
  R8950_RS06880 (B10539_13620) - 1339743..1340984 (-) 1242 WP_317727435.1 DUF2920 family protein -
  R8950_RS06885 (B10539_13630) ctsG 1340984..1341499 (-) 516 WP_227562097.1 type II secretion system protein Machinery gene
  R8950_RS06890 (B10539_13640) tsaD 1341500..1342507 (-) 1008 WP_317725289.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8950_RS06895 (B10539_13650) - 1342504..1343898 (-) 1395 WP_317725291.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8950_RS06900 (B10539_13660) dxr 1343900..1344970 (-) 1071 WP_002859634.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8950_RS06905 (B10539_13670) cdsA 1344967..1345692 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  R8950_RS06910 (B10539_13680) - 1345701..1346039 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18776.75 Da        Isoelectric Point: 6.4710

>NTDB_id=104678 R8950_RS06885 WP_227562097.1 1340984..1341499(-) (ctsG) [Campylobacter jejuni strain BCH-10539]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLKN
FTGIKEVNFRVGEDKECIKLIFIDKNDFVLMGISSNEASKNAIINAANQSHEDLENIDFISSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104678 R8950_RS06885 WP_227562097.1 1340984..1341499(-) (ctsG) [Campylobacter jejuni strain BCH-10539]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTAAAAAT
TTTACAGGTATAAAAGAAGTAAATTTTAGGGTAGGAGAGGATAAAGAGTGTATAAAGCTGATTTTCATTGATAAAAATGA
TTTTGTATTGATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTATAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

89.474

100

0.895

Multiple sequence alignment