Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8950_RS02905 Genome accession   NZ_AP028355
Coordinates   550187..550837 (-) Length   216 a.a.
NCBI ID   WP_002852117.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni strain BCH-10539     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 545187..555837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8950_RS02870 (B10539_05650) - 545565..546569 (+) 1005 WP_079862331.1 hypothetical protein -
  R8950_RS02875 (B10539_05660) tlyA 546566..547327 (+) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  R8950_RS02880 (B10539_05670) ribF 547293..548147 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  R8950_RS02885 (B10539_05680) cmoA 548134..548844 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8950_RS02890 (B10539_05690) - 548834..549055 (-) 222 WP_002859102.1 EexN family lipoprotein -
  R8950_RS02895 (B10539_05700) - 549052..549486 (-) 435 WP_070310241.1 EexN family lipoprotein -
  R8950_RS02900 (B10539_05710) - 549544..550176 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  R8950_RS02905 (B10539_05720) CJE0566 550187..550837 (-) 651 WP_002852117.1 DNA/RNA non-specific endonuclease Regulator
  R8950_RS02910 (B10539_05730) nth 550834..551460 (-) 627 WP_002852225.1 endonuclease III -
  R8950_RS02915 (B10539_05740) peb4 551541..552362 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  R8950_RS02920 (B10539_05750) fbaA 552362..553426 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  R8950_RS02925 (B10539_05760) - 553521..554963 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=104667 R8950_RS02905 WP_002852117.1 550187..550837(-) (CJE0566) [Campylobacter jejuni strain BCH-10539]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=104667 R8950_RS02905 WP_002852117.1 550187..550837(-) (CJE0566) [Campylobacter jejuni strain BCH-10539]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment