Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8612_RS02180 Genome accession   NZ_AP028351
Coordinates   445206..445721 (+) Length   171 a.a.
NCBI ID   WP_057037259.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10460     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440206..450721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8612_RS02155 (B10460_04190) - 440662..441000 (+) 339 WP_002777761.1 hypothetical protein -
  R8612_RS02160 (B10460_04200) - 441009..441734 (+) 726 WP_002792130.1 phosphatidate cytidylyltransferase -
  R8612_RS02165 (B10460_04210) dxr 441731..442807 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8612_RS02170 (B10460_04220) - 442804..444198 (+) 1395 WP_057037258.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8612_RS02175 (B10460_04230) tsaD 444195..445202 (+) 1008 WP_004283557.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8612_RS02180 (B10460_04240) ctsG 445206..445721 (+) 516 WP_057037259.1 type II secretion system protein Machinery gene
  R8612_RS02185 (B10460_04250) - 445721..446971 (+) 1251 WP_317647446.1 DUF2920 family protein -
  R8612_RS02190 (B10460_04260) - 446982..448805 (+) 1824 WP_317647447.1 motility associated factor glycosyltransferase family protein -
  R8612_RS02195 (B10460_04270) - 448802..450622 (+) 1821 WP_052794584.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18763.61 Da        Isoelectric Point: 7.1358

>NTDB_id=104618 R8612_RS02180 WP_057037259.1 445206..445721(+) (ctsG) [Campylobacter coli strain BCH-10460]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNNHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104618 R8612_RS02180 WP_057037259.1 445206..445721(+) (ctsG) [Campylobacter coli strain BCH-10460]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATAATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.228

100

0.912

Multiple sequence alignment