Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8561_RS06840 Genome accession   NZ_AP028350
Coordinates   1325385..1325912 (-) Length   175 a.a.
NCBI ID   WP_023890578.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10420     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320385..1330912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8561_RS06825 (B10420_13410) - 1320488..1322227 (-) 1740 WP_317648212.1 flagellin A -
  R8561_RS06830 (B10420_13420) - 1322311..1324140 (-) 1830 WP_317648965.1 motility associated factor glycosyltransferase family protein -
  R8561_RS06835 (B10420_13430) - 1324151..1325398 (-) 1248 WP_023890579.1 DUF2920 family protein -
  R8561_RS06840 (B10420_13440) ctsG 1325385..1325912 (-) 528 WP_023890578.1 type II secretion system protein Machinery gene
  R8561_RS06845 (B10420_13450) tsaD 1325913..1326920 (-) 1008 WP_023890577.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8561_RS06850 (B10420_13460) - 1326917..1328311 (-) 1395 WP_023890576.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8561_RS06855 (B10420_13470) dxr 1328313..1329383 (-) 1071 WP_002783930.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8561_RS06860 (B10420_13480) - 1329380..1330105 (-) 726 WP_002812238.1 phosphatidate cytidylyltransferase -
  R8561_RS06865 (B10420_13490) - 1330114..1330452 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19343.39 Da        Isoelectric Point: 8.4720

>NTDB_id=104597 R8561_RS06840 WP_023890578.1 1325385..1325912(-) (ctsG) [Campylobacter coli strain BCH-10420]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLKN
FTGIKEVKFRVGEDKECIKLIFIDKNDFVLMGISSNEASKNTIINIANNPKQEFQSLDFISSSKNKACVALSKNENFKNL
ASQTYVLIGGFDDSK

Nucleotide


Download         Length: 528 bp        

>NTDB_id=104597 R8561_RS06840 WP_023890578.1 1325385..1325912(-) (ctsG) [Campylobacter coli strain BCH-10420]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGAGTGGAAAATGTCGATCTTAAAAAT
TTCACAGGCATAAAAGAAGTGAAATTTAGAGTGGGAGAAGATAAAGAGTGTATAAAGCTGATTTTCATCGATAAAAATGA
TTTTGTATTAATGGGAATTTCTAGTAACGAAGCAAGCAAAAATACCATAATCAATATAGCCAATAATCCAAAACAAGAAT
TTCAAAGCTTAGACTTTATAAGCAGCTCAAAAAATAAGGCTTGCGTGGCATTAAGCAAAAATGAGAATTTTAAGAATTTA
GCAAGCCAAACTTATGTTTTAATAGGGGGATTTGATGATAGTAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

80.702

97.714

0.789

Multiple sequence alignment