Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGH   Type   Machinery gene
Locus tag   ACI6O7_RS10660 Genome accession   NZ_OY725152
Coordinates   2151049..2151987 (-) Length   312 a.a.
NCBI ID   WP_012898520.1    Uniprot ID   -
Organism   Lactococcus lactis strain IMDO WA12L8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2146049..2156987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O7_RS10635 (LLWA12L8_FAMOGCFE_02132) frr 2146166..2146723 (-) 558 WP_004254618.1 ribosome recycling factor -
  ACI6O7_RS10640 (LLWA12L8_FAMOGCFE_02133) pyrH 2146936..2147652 (-) 717 WP_021464089.1 UMP kinase -
  ACI6O7_RS10645 (LLWA12L8_FAMOGCFE_02134) - 2147737..2148189 (-) 453 WP_404378490.1 hypothetical protein -
  ACI6O7_RS10650 (LLWA12L8_FAMOGCFE_02135) - 2148323..2149510 (-) 1188 WP_015427114.1 acetate kinase -
  ACI6O7_RS10655 (LLWA12L8_FAMOGCFE_02136) - 2149667..2150854 (-) 1188 WP_004254593.1 acetate kinase -
  ACI6O7_RS10660 (LLWA12L8_FAMOGCFE_02137) comGH 2151049..2151987 (-) 939 WP_012898520.1 class I SAM-dependent methyltransferase Machinery gene
  ACI6O7_RS10665 (LLWA12L8_FAMOGCFE_02138) - 2152075..2152326 (-) 252 WP_404378493.1 DUF3165 family protein -
  ACI6O7_RS10670 (LLWA12L8_FAMOGCFE_02139) typA 2152427..2154259 (-) 1833 WP_025016832.1 translational GTPase TypA -
  ACI6O7_RS10675 (LLWA12L8_FAMOGCFE_02140) - 2154447..2154905 (-) 459 WP_404378495.1 hypothetical protein -
  ACI6O7_RS10680 - 2155062..2155687 (-) 626 Protein_2075 ABC transporter ATP-binding protein -
  ACI6O7_RS10685 (LLWA12L8_FAMOGCFE_02143) - 2155688..2156857 (-) 1170 WP_404378497.1 DUF1430 domain-containing protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.94 Da        Isoelectric Point: 4.3717

>NTDB_id=1045641 ACI6O7_RS10660 WP_012898520.1 2151049..2151987(-) (comGH) [Lactococcus lactis strain IMDO WA12L8]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1045641 ACI6O7_RS10660 WP_012898520.1 2151049..2151987(-) (comGH) [Lactococcus lactis strain IMDO WA12L8]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGH Streptococcus mutans UA140

48.882

100

0.49
  comGH Streptococcus mutans UA159

48.562

100

0.487