Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8906_RS06540 Genome accession   NZ_AP028346
Coordinates   1254971..1255486 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain BCH-10335     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1249971..1260486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8906_RS06525 (B10335_12850) - 1250071..1251891 (-) 1821 WP_317725723.1 motility associated factor glycosyltransferase family protein -
  R8906_RS06530 (B10335_12860) - 1251888..1253711 (-) 1824 WP_175565732.1 motility associated factor glycosyltransferase family protein -
  R8906_RS06535 - 1253722..1254971 (-) 1250 Protein_1266 DUF2920 family protein -
  R8906_RS06540 (B10335_12890) ctsG 1254971..1255486 (-) 516 WP_002799196.1 type II secretion system protein Machinery gene
  R8906_RS06545 (B10335_12900) tsaD 1255487..1256494 (-) 1008 WP_002860794.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8906_RS06550 (B10335_12910) - 1256491..1257885 (-) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8906_RS06555 (B10335_12920) dxr 1257887..1258957 (-) 1071 WP_032583833.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8906_RS06560 (B10335_12930) cdsA 1258954..1259679 (-) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  R8906_RS06565 (B10335_12940) - 1259688..1260026 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=104548 R8906_RS06540 WP_002799196.1 1254971..1255486(-) (ctsG) [Campylobacter jejuni strain BCH-10335]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104548 R8906_RS06540 WP_002799196.1 1254971..1255486(-) (ctsG) [Campylobacter jejuni strain BCH-10335]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment