Detailed information    

insolico Bioinformatically predicted

Overview


Name   ctsG   Type   Machinery gene
Locus tag   ACEN40_RS03580 Genome accession   NZ_CP168724
Coordinates   681518..682045 (+) Length   175 a.a.
NCBI ID   WP_158335086.1    Uniprot ID   -
Organism   Campylobacter bilis strain 64     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 676518..687045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN40_RS03555 (ACEN40_03555) - 676981..677316 (+) 336 WP_158335091.1 hypothetical protein -
  ACEN40_RS03560 (ACEN40_03560) - 677325..678050 (+) 726 WP_158335090.1 phosphatidate cytidylyltransferase -
  ACEN40_RS03565 (ACEN40_03565) dxr 678047..679117 (+) 1071 WP_158335089.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACEN40_RS03570 (ACEN40_03570) - 679119..680513 (+) 1395 WP_158335088.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACEN40_RS03575 (ACEN40_03575) tsaD 680510..681517 (+) 1008 WP_158335087.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACEN40_RS03580 (ACEN40_03580) ctsG 681518..682045 (+) 528 WP_158335086.1 type II secretion system protein Machinery gene
  ACEN40_RS03585 (ACEN40_03585) - 682032..683273 (+) 1242 WP_158335085.1 DUF2920 family protein -
  ACEN40_RS03590 (ACEN40_03590) - 683283..685094 (+) 1812 WP_373447872.1 motility associated factor glycosyltransferase family protein -
  ACEN40_RS03595 (ACEN40_03595) - 685215..686951 (+) 1737 WP_373447873.1 flagellin A -

Sequence


Protein


Download         Length: 175 a.a.        Molecular weight: 19374.17 Da        Isoelectric Point: 4.7383

>NTDB_id=1045284 ACEN40_RS03580 WP_158335086.1 681518..682045(+) (ctsG) [Campylobacter bilis strain 64]
MKRAFTILELVFVIVILGALAAIALPKLAYNKDEAELSKSLNNLKTLINDISIYALKNDHLSTIKAMSNVSEVENADLKD
FDEVKELNFGVAEDKECLKLVFINKADFVLMGVSSNEASKNAIINAANNIKDDFENIDFTSTSKNRSCVALSKNENFKNL
ASKTYLLLGQFNDSE

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1045284 ACEN40_RS03580 WP_158335086.1 681518..682045(+) (ctsG) [Campylobacter bilis strain 64]
ATGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTGATAGTGATTTTAGGCGCTTTAGCTGCTATTGCCTTGCCAAA
ATTGGCTTATAATAAAGATGAGGCTGAGCTTAGCAAATCTTTAAATAATCTTAAAACTTTAATCAATGATATTAGCATTT
ATGCTTTAAAAAACGATCATTTAAGCACTATAAAAGCGATGAGTAATGTTAGCGAGGTTGAAAATGCTGATCTTAAAGAT
TTTGATGAAGTAAAAGAGCTTAATTTTGGTGTAGCTGAGGATAAAGAGTGCTTAAAGCTTGTCTTTATCAATAAAGCAGA
TTTTGTTTTAATGGGAGTTTCAAGCAATGAAGCTAGCAAAAATGCTATTATCAATGCAGCTAATAATATCAAAGATGATT
TTGAAAACATTGATTTTACAAGTACTTCAAAAAATAGATCTTGTGTGGCTTTGAGTAAAAATGAGAATTTTAAAAATTTA
GCTAGCAAAACTTATCTTTTATTAGGGCAATTTAATGATAGTGAGTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

75.148

96.571

0.726


Multiple sequence alignment