Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACEN41_RS05770 Genome accession   NZ_CP168723
Coordinates   1089061..1089588 (-) Length   175 a.a.
NCBI ID   WP_158335086.1    Uniprot ID   -
Organism   Campylobacter bilis strain 63     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1084061..1094588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN41_RS05755 (ACEN41_05755) - 1084155..1085891 (-) 1737 WP_373447873.1 flagellin A -
  ACEN41_RS05760 (ACEN41_05760) - 1085998..1087823 (-) 1826 Protein_1115 motility associated factor glycosyltransferase family protein -
  ACEN41_RS05765 (ACEN41_05765) - 1087833..1089074 (-) 1242 WP_158335085.1 DUF2920 family protein -
  ACEN41_RS05770 (ACEN41_05770) ctsG 1089061..1089588 (-) 528 WP_158335086.1 type II secretion system protein Machinery gene
  ACEN41_RS05775 (ACEN41_05775) tsaD 1089589..1090596 (-) 1008 WP_158335087.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACEN41_RS05780 (ACEN41_05780) - 1090593..1091987 (-) 1395 WP_158335088.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACEN41_RS05785 (ACEN41_05785) dxr 1091989..1093059 (-) 1071 WP_158335089.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACEN41_RS05790 (ACEN41_05790) - 1093056..1093781 (-) 726 WP_158335090.1 phosphatidate cytidylyltransferase -
  ACEN41_RS05795 (ACEN41_05795) - 1093790..1094125 (-) 336 WP_158335091.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19374.17 Da        Isoelectric Point: 4.7383

>NTDB_id=1045273 ACEN41_RS05770 WP_158335086.1 1089061..1089588(-) (ctsG) [Campylobacter bilis strain 63]
MKRAFTILELVFVIVILGALAAIALPKLAYNKDEAELSKSLNNLKTLINDISIYALKNDHLSTIKAMSNVSEVENADLKD
FDEVKELNFGVAEDKECLKLVFINKADFVLMGVSSNEASKNAIINAANNIKDDFENIDFTSTSKNRSCVALSKNENFKNL
ASKTYLLLGQFNDSE

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1045273 ACEN41_RS05770 WP_158335086.1 1089061..1089588(-) (ctsG) [Campylobacter bilis strain 63]
ATGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTGATAGTGATTTTAGGCGCTTTAGCTGCTATTGCCTTGCCAAA
ATTGGCTTATAATAAAGATGAGGCTGAGCTTAGCAAATCTTTAAATAATCTTAAAACTTTAATCAATGATATTAGCATTT
ATGCTTTAAAAAACGATCATTTAAGCACTATAAAAGCGATGAGTAATGTTAGCGAGGTTGAAAATGCTGATCTTAAAGAT
TTTGATGAAGTAAAAGAGCTTAATTTTGGTGTAGCTGAGGATAAAGAGTGCTTAAAGCTTGTCTTTATCAATAAAGCAGA
TTTTGTTTTAATGGGAGTTTCAAGCAATGAAGCTAGCAAAAATGCTATTATCAATGCAGCTAATAATATCAAAGATGATT
TTGAAAACATTGATTTTACAAGTACTTCAAAAAATAGATCTTGTGTGGCTTTGAGTAAAAATGAGAATTTTAAAAATTTA
GCTAGCAAAACTTATCTTTTATTAGGGCAATTTAATGATAGTGAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

75.148

96.571

0.726

Multiple sequence alignment