Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8917_RS07055 Genome accession   NZ_AP028344
Coordinates   1365943..1366458 (-) Length   171 a.a.
NCBI ID   WP_002882705.1    Uniprot ID   A0A5T1TAX2
Organism   Campylobacter jejuni strain BCH-10331     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360943..1371458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8917_RS07040 (B10331_13800) - 1361055..1362872 (-) 1818 WP_317725473.1 motility associated factor glycosyltransferase family protein -
  R8917_RS07045 (B10331_13810) - 1362869..1364692 (-) 1824 WP_317725474.1 motility associated factor glycosyltransferase family protein -
  R8917_RS07050 (B10331_13820) - 1364702..1365943 (-) 1242 WP_218982735.1 DUF2920 family protein -
  R8917_RS07055 (B10331_13830) ctsG 1365943..1366458 (-) 516 WP_002882705.1 type II secretion system protein Machinery gene
  R8917_RS07060 (B10331_13840) tsaD 1366459..1367466 (-) 1008 WP_070264910.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8917_RS07065 (B10331_13850) - 1367463..1368857 (-) 1395 WP_139885984.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8917_RS07070 (B10331_13860) dxr 1368859..1369929 (-) 1071 WP_317725476.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8917_RS07075 (B10331_13870) cdsA 1369926..1370651 (-) 726 WP_060816365.1 phosphatidate cytidylyltransferase -
  R8917_RS07080 (B10331_13880) - 1370660..1370998 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18765.55 Da        Isoelectric Point: 5.2731

>NTDB_id=104521 R8917_RS07055 WP_002882705.1 1365943..1366458(-) (ctsG) [Campylobacter jejuni strain BCH-10331]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGEM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104521 R8917_RS07055 WP_002882705.1 1365943..1366458(-) (ctsG) [Campylobacter jejuni strain BCH-10331]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGGGAAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1TAX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment