Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   QOY19_RS09480 Genome accession   NZ_OX595791
Coordinates   1881903..1883171 (+) Length   422 a.a.
NCBI ID   WP_000774758.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1876903..1888171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOY19_RS09440 prmA 1877092..1878045 (-) 954 WP_001099295.1 50S ribosomal protein L11 methyltransferase -
  QOY19_RS09445 - 1878042..1878506 (-) 465 WP_306425667.1 MepB family protein -
  QOY19_RS09450 - 1878624..1879340 (+) 717 WP_000859566.1 MerR family transcriptional regulator -
  QOY19_RS09455 - 1879379..1879849 (-) 471 WP_000631753.1 GNAT family N-acetyltransferase -
  QOY19_RS09460 - 1879821..1880279 (-) 459 WP_000376721.1 NUDIX hydrolase -
  QOY19_RS09465 - 1880272..1880580 (-) 309 WP_001868493.1 hypothetical protein -
  QOY19_RS09470 - 1880623..1881093 (-) 471 WP_001051336.1 DUF3013 family protein -
  QOY19_RS09475 - 1881419..1881910 (+) 492 WP_000586891.1 GNAT family N-acetyltransferase -
  QOY19_RS09480 rarA 1881903..1883171 (+) 1269 WP_000774758.1 replication-associated recombination protein A Machinery gene
  QOY19_RS10500 - 1883573..1883769 (-) 197 Protein_1793 tyrosine-type recombinase/integrase -
  QOY19_RS10505 - 1883809..1883952 (-) 144 Protein_1794 hypothetical protein -
  QOY19_RS09490 - 1883967..1884245 (-) 279 WP_001870649.1 hypothetical protein -
  QOY19_RS09495 - 1884242..1884628 (-) 387 WP_000731526.1 DUF1310 family protein -
  QOY19_RS09500 - 1884735..1885307 (-) 573 WP_000622523.1 hypothetical protein -
  QOY19_RS09505 - 1885309..1885641 (-) 333 WP_000792760.1 hypothetical protein -
  QOY19_RS09510 - 1886700..1887026 (+) 327 WP_000134166.1 hypothetical protein -
  QOY19_RS09515 - 1887075..1887203 (+) 129 WP_001870638.1 hypothetical protein -
  QOY19_RS10510 - 1887164..1887322 (+) 159 Protein_1801 site-specific integrase -
  QOY19_RS09520 - 1887644..1887934 (+) 291 WP_000078286.1 WXG100 family type VII secretion target -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46612.05 Da        Isoelectric Point: 6.5117

>NTDB_id=1044893 QOY19_RS09480 WP_000774758.1 1881903..1883171(+) (rarA) [Streptococcus agalactiae isolate MRI Z2-270]
MADNLALRMRPRNINEIIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIITATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNAKDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1044893 QOY19_RS09480 WP_000774758.1 1881903..1883171(+) (rarA) [Streptococcus agalactiae isolate MRI Z2-270]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAATCATTGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGACCACCAGGTATCGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATCCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAA
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTATTACCGC
CACAAATGGAGACCTGCGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAATGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCAAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAAGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.952

98.815

0.592