Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACEO96_RS01025 Genome accession   NZ_CP168657
Coordinates   201767..202468 (-) Length   233 a.a.
NCBI ID   WP_019282843.1    Uniprot ID   A0A233HRJ8
Organism   Vibrio anguillarum strain VA1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 196767..207468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEO96_RS00995 (ACEO96_00995) gspL 196970..198181 (+) 1212 WP_170899618.1 type II secretion system protein GspL -
  ACEO96_RS01000 (ACEO96_01000) - 198192..198689 (+) 498 WP_170895680.1 type II secretion system protein M -
  ACEO96_RS01005 (ACEO96_01005) - 198686..199444 (+) 759 WP_170895681.1 type II secretion system protein N -
  ACEO96_RS01010 (ACEO96_01010) cysQ 199527..200354 (-) 828 WP_010319313.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACEO96_RS01015 (ACEO96_01015) nudE 200379..200924 (-) 546 WP_010319312.1 ADP compounds hydrolase NudE -
  ACEO96_RS01020 (ACEO96_01020) nfuA 201080..201667 (-) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  ACEO96_RS01025 (ACEO96_01025) comF 201767..202468 (-) 702 WP_019282843.1 amidophosphoribosyltransferase Machinery gene
  ACEO96_RS01030 (ACEO96_01030) bioH 202615..203379 (+) 765 WP_038148688.1 pimeloyl-ACP methyl ester esterase BioH -
  ACEO96_RS01035 (ACEO96_01035) - 203645..204115 (+) 471 WP_026027513.1 hypothetical protein -
  ACEO96_RS01040 (ACEO96_01040) - 204265..206595 (-) 2331 WP_170899616.1 Tex family protein -
  ACEO96_RS01045 (ACEO96_01045) greB 206942..207424 (+) 483 WP_010319306.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26630.04 Da        Isoelectric Point: 9.4459

>NTDB_id=1044802 ACEO96_RS01025 WP_019282843.1 201767..202468(-) (comF) [Vibrio anguillarum strain VA1]
MLSHWVQKTITRLVSRQCLLCRLPIETHQTGAWCKTCLTYFAPQPRCQQCGLPTLITVPQCGQCLANPPPWQRLYCVGDY
IFPLSHTIHQLKYEGQFWQSRHLSALLTPRIDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLIKRNR
ATPQQQGLSKLQRKQNLKHAFTLRHLPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1044802 ACEO96_RS01025 WP_019282843.1 201767..202468(-) (comF) [Vibrio anguillarum strain VA1]
ATGTTATCGCATTGGGTTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGGGCTTGGTGTAAGACCTGCCTAACCTATTTTGCACCGCAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATTACCGTGCCTCAATGTGGGCAATGTTTAGCGAATCCTCCGCCTTGGCAACGCCTATACTGTGTCGGCGACTAT
ATTTTTCCGCTCAGTCACACCATTCATCAACTCAAATATGAAGGTCAATTTTGGCAATCTCGCCATTTGAGTGCCTTACT
GACGCCACGTATCGACACTCCCGCCCCGCTCATCACTAGCGTTCCGTTACACTGGCAACGGCGCTTAAAACGCGGCTTCA
ATCAAAGTGCACTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGATCAAACGCAATCGC
GCAACGCCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAACAAAATCTCAAACATGCATTCACACTACGGCACCTCCC
CACGCACAAGCACATTGCACTTGTTGACGATGTAGTGACCACGGGCAGCACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HRJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.369

100

0.584
  comF Vibrio campbellii strain DS40M4

51.681

100

0.528

Multiple sequence alignment