Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8493_RS06790 Genome accession   NZ_AP028341
Coordinates   1312389..1312904 (-) Length   171 a.a.
NCBI ID   WP_317647123.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10328     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1307389..1317904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8493_RS06775 (B10328_13260) - 1307505..1309322 (-) 1818 WP_317647120.1 motility associated factor glycosyltransferase family protein -
  R8493_RS06780 (B10328_13270) - 1309319..1311136 (-) 1818 WP_317647121.1 motility associated factor glycosyltransferase family protein -
  R8493_RS06785 (B10328_13280) - 1311148..1312389 (-) 1242 WP_317647122.1 DUF2920 family protein -
  R8493_RS06790 (B10328_13290) ctsG 1312389..1312904 (-) 516 WP_317647123.1 type II secretion system protein Machinery gene
  R8493_RS06795 (B10328_13300) tsaD 1312905..1313912 (-) 1008 WP_317647124.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8493_RS06800 (B10328_13310) - 1313909..1315303 (-) 1395 WP_317647125.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8493_RS06805 (B10328_13320) dxr 1315300..1316376 (-) 1077 WP_002825240.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8493_RS06810 (B10328_13330) - 1316373..1317101 (-) 729 WP_002825238.1 phosphatidate cytidylyltransferase -
  R8493_RS06815 (B10328_13340) - 1317110..1317448 (-) 339 WP_002825237.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18722.57 Da        Isoelectric Point: 5.7840

>NTDB_id=104466 R8493_RS06790 WP_317647123.1 1312389..1312904(-) (ctsG) [Campylobacter coli strain BCH-10328]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGEM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104466 R8493_RS06790 WP_317647123.1 1312389..1312904(-) (ctsG) [Campylobacter coli strain BCH-10328]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGGGAAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment