Detailed information NTG1044564

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACEN9H_RS24855
• Genome accession: NZ_CP168562
• Coordinates: 5698209..5699072 (+)
• Length: 287 a.a.
• NCBI ID: WP_413672455.1
• Uniprot ID: -
• Organism: Massilia cellulosiltytica strain CT11-92
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5693209..5704072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEN9H_RS24835 (ACEN9H_24840)	-	5694062..5694958 (+)	897	WP_413672452.1	DMT family transporter	-
ACEN9H_RS24840 (ACEN9H_24845)	-	5694928..5695233 (-)	306	WP_371768675.1	hypothetical protein	-
ACEN9H_RS24845 (ACEN9H_24850)	-	5695371..5697542 (+)	2172	WP_413672453.1	putative bifunctional diguanylate cyclase/phosphodiesterase	-
ACEN9H_RS24850 (ACEN9H_24855)	-	5697553..5698011 (-)	459	WP_413672454.1	RidA family protein	-
ACEN9H_RS24855 (ACEN9H_24860)	pilD	5698209..5699072 (+)	864	WP_413672455.1	prepilin peptidase	Machinery gene
ACEN9H_RS24860 (ACEN9H_24865)	coaE	5699097..5699738 (+)	642	WP_413672456.1	dephospho-CoA kinase	-
ACEN9H_RS24865 (ACEN9H_24870)	zapD	5699812..5700567 (+)	756	WP_056122871.1	cell division protein ZapD	-
ACEN9H_RS24870 (ACEN9H_24875)	yacG	5700577..5700759 (+)	183	WP_371763541.1	DNA gyrase inhibitor YacG	-
ACEN9H_RS24875 (ACEN9H_24880)	-	5700879..5701325 (-)	447	WP_413672457.1	NUDIX domain-containing protein	-
ACEN9H_RS24880 (ACEN9H_24885)	-	5701318..5702223 (-)	906	WP_056122862.1	ATP-binding protein	-
ACEN9H_RS24885 (ACEN9H_24890)	argJ	5702228..5703466 (-)	1239	WP_413672458.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31079.94 Da
• Isoelectric Point: 7.7340

>NTDB_id=1044564 ACEN9H_RS24855 WP_413672455.1 5698209..5699072(+) (pilD) [Massilia cellulosiltytica strain CT11-92]
METLLFAAPATLAATLTAALFGLLIGSFLNVVVYRLPVMAQRELDNYIAHEAGKDLPHPDRFNLMVPRSACPHCGHQITA
LENIPIVSWLALRGKCSACKAPISPRYPIVEAVTGLLSAVLVWHFGSGWLGLASLAFAYFLIAMTLIDYDTKTLPDDLTY
PLLWLGLLVNLDGTIVPLRDAVIGAMAGYLALWAVYWLFKLATGKEGMGYGDFKLLAALGAWMGWAMLPTIIILSSVVGA
IVGISLIVFARRDRNNPIPFGPYLAAAGMIALLYGIPLTRYAQGYLV

Nucleotide

• Length: 864 bp

>NTDB_id=1044564 ACEN9H_RS24855 WP_413672455.1 5698209..5699072(+) (pilD) [Massilia cellulosiltytica strain CT11-92]
ATGGAAACCCTGCTCTTCGCCGCCCCGGCGACCCTCGCCGCGACCCTCACCGCCGCCTTGTTCGGCCTGTTGATCGGCAG
CTTCCTGAACGTGGTCGTGTACCGCCTGCCCGTGATGGCGCAGCGCGAACTCGACAACTACATCGCGCACGAAGCGGGCA
AGGACCTGCCGCACCCGGACCGCTTCAACCTGATGGTGCCCCGCTCGGCCTGCCCGCACTGCGGCCACCAGATCACGGCG
CTGGAAAACATCCCCATCGTCAGCTGGCTGGCCCTAAGAGGCAAATGCAGCGCGTGCAAGGCGCCGATCTCGCCCCGCTA
TCCGATCGTGGAAGCCGTGACGGGCCTGCTGTCGGCCGTGCTGGTCTGGCATTTCGGCAGCGGCTGGCTGGGCCTCGCGA
GCCTCGCGTTCGCGTACTTCCTGATCGCAATGACGTTGATCGACTACGACACGAAGACCTTGCCGGACGACCTCACGTAC
CCGCTCCTGTGGCTGGGCCTGCTCGTGAACCTGGACGGCACCATCGTCCCGCTGCGCGACGCCGTGATCGGCGCCATGGC
CGGCTACCTGGCGCTGTGGGCCGTGTACTGGCTGTTCAAGCTCGCCACCGGCAAGGAAGGCATGGGCTACGGCGACTTCA
AGCTGCTCGCCGCGCTGGGCGCGTGGATGGGCTGGGCGATGCTGCCGACCATTATCATCCTGTCGTCCGTCGTCGGCGCC
ATCGTCGGCATCTCGCTGATCGTGTTCGCGCGCCGCGACCGCAATAATCCAATTCCCTTCGGACCGTATCTCGCCGCGGC
TGGTATGATCGCACTCTTGTACGGAATACCACTCACCCGCTACGCGCAGGGTTACCTGGTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.634	91.289	0.526
pilD	Vibrio campbellii strain DS40M4	53.257	90.941	0.484
pilD	Acinetobacter baumannii D1279779	49.434	92.334	0.456
pilD	Acinetobacter nosocomialis M2	49.057	92.334	0.453
pilD	Neisseria gonorrhoeae MS11	49.416	89.547	0.443