Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   QOR59_RS09930 Genome accession   NZ_OX460985
Coordinates   1969799..1971067 (+) Length   422 a.a.
NCBI ID   WP_000774761.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-307     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1964799..1976067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR59_RS09890 prmA 1965195..1966148 (-) 954 WP_001099294.1 50S ribosomal protein L11 methyltransferase -
  QOR59_RS09895 - 1966145..1966609 (-) 465 WP_306341185.1 MepB family protein -
  QOR59_RS09900 - 1966727..1967443 (+) 717 WP_000859572.1 MerR family transcriptional regulator -
  QOR59_RS09905 - 1967482..1967952 (-) 471 WP_000631751.1 GNAT family N-acetyltransferase -
  QOR59_RS09910 - 1967924..1968382 (-) 459 WP_000350744.1 NUDIX hydrolase -
  QOR59_RS09915 - 1968518..1968988 (-) 471 WP_001051348.1 DUF3013 family protein -
  QOR59_RS09920 - 1969132..1969316 (-) 185 Protein_1878 hypothetical protein -
  QOR59_RS09925 - 1969315..1969806 (+) 492 WP_000586891.1 GNAT family N-acetyltransferase -
  QOR59_RS09930 rarA 1969799..1971067 (+) 1269 WP_000774761.1 replication-associated recombination protein A Machinery gene
  QOR59_RS09940 - 1971610..1971915 (-) 306 WP_000511799.1 hypothetical protein -
  QOR59_RS09945 - 1971899..1972300 (-) 402 WP_000517013.1 hypothetical protein -
  QOR59_RS10770 - 1972942..1973496 (-) 555 Protein_1883 hypothetical protein -
  QOR59_RS09955 - 1973498..1973830 (-) 333 WP_000792763.1 hypothetical protein -
  QOR59_RS09960 - 1974118..1974528 (-) 411 WP_309473848.1 hypothetical protein -
  QOR59_RS09965 - 1974669..1975391 (-) 723 WP_000901038.1 ABC transporter permease -
  QOR59_RS09970 - 1975395..1976012 (-) 618 WP_000470461.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46626.04 Da        Isoelectric Point: 6.5117

>NTDB_id=1044355 QOR59_RS09930 WP_000774761.1 1969799..1971067(+) (rarA) [Streptococcus agalactiae isolate MRI Z2-307]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1044355 QOR59_RS09930 WP_000774761.1 1969799..1971067(+) (rarA) [Streptococcus agalactiae isolate MRI Z2-307]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTCTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTTATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATATCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCCGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCTTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTACTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588