Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACEPOS_RS12335 Genome accession   NZ_CP168497
Coordinates   2470771..2471457 (+) Length   228 a.a.
NCBI ID   WP_078064551.1    Uniprot ID   -
Organism   Staphylococcus aureus strain J23     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2465771..2476457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPOS_RS12300 (ACEPOS_12300) yqeH 2466298..2467398 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  ACEPOS_RS12305 (ACEPOS_12305) aroE 2467412..2468218 (+) 807 WP_000666745.1 shikimate dehydrogenase -
  ACEPOS_RS12310 (ACEPOS_12310) yhbY 2468222..2468512 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  ACEPOS_RS12315 (ACEPOS_12315) nadD 2468515..2469084 (+) 570 WP_000725166.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACEPOS_RS12320 (ACEPOS_12320) yqeK 2469074..2469658 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACEPOS_RS12325 (ACEPOS_12325) rsfS 2469659..2470012 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACEPOS_RS12330 (ACEPOS_12330) - 2470015..2470731 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  ACEPOS_RS12335 (ACEPOS_12335) comEA 2470771..2471457 (+) 687 WP_078064551.1 ComEA family DNA-binding protein Machinery gene
  ACEPOS_RS12340 (ACEPOS_12340) - 2471549..2472010 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ACEPOS_RS12345 (ACEPOS_12345) comEC 2472015..2474216 (+) 2202 WP_271019749.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACEPOS_RS12350 (ACEPOS_12350) holA 2474273..2475247 (+) 975 WP_271019750.1 DNA polymerase III subunit delta -
  ACEPOS_RS12355 (ACEPOS_12355) rpsT 2475292..2475543 (-) 252 WP_271019751.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=1044313 ACEPOS_RS12335 WP_078064551.1 2470771..2471457(+) (comEA) [Staphylococcus aureus strain J23]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1044313 ACEPOS_RS12335 WP_078064551.1 2470771..2471457(+) (comEA) [Staphylococcus aureus strain J23]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.684

100

0.987
  comEA Staphylococcus aureus N315

98.684

100

0.987

Multiple sequence alignment