Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8965_RS07460 Genome accession   NZ_AP028338
Coordinates   1393654..1394169 (-) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain BCH-10307     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1388654..1399169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8965_RS07445 (B10307_14730) - 1388755..1390575 (-) 1821 WP_153260368.1 motility associated factor glycosyltransferase family protein -
  R8965_RS07450 (B10307_14740) - 1390572..1392401 (-) 1830 WP_317727873.1 motility associated factor glycosyltransferase family protein -
  R8965_RS07455 (B10307_14750) - 1392413..1393654 (-) 1242 WP_002780551.1 DUF2920 family protein -
  R8965_RS07460 (B10307_14760) ctsG 1393654..1394169 (-) 516 WP_002780549.1 type II secretion system protein Machinery gene
  R8965_RS07465 (B10307_14770) tsaD 1394173..1395180 (-) 1008 WP_165433429.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8965_RS07470 (B10307_14780) - 1395177..1396571 (-) 1395 WP_002797421.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8965_RS07475 (B10307_14790) dxr 1396568..1397644 (-) 1077 WP_002799194.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8965_RS07480 (B10307_14800) - 1397641..1398366 (-) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  R8965_RS07485 (B10307_14810) - 1398375..1398713 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=104415 R8965_RS07460 WP_002780549.1 1393654..1394169(-) (ctsG) [Campylobacter coli strain BCH-10307]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104415 R8965_RS07460 WP_002780549.1 1393654..1394169(-) (ctsG) [Campylobacter coli strain BCH-10307]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918

Multiple sequence alignment