Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QOR54_RS04880 Genome accession   NZ_OX460968
Coordinates   899856..900713 (+) Length   285 a.a.
NCBI ID   WP_000163020.1    Uniprot ID   Q8E067
Organism   Streptococcus agalactiae isolate MRI Z2-342     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 894856..905713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR54_RS04850 - 895172..896053 (+) 882 WP_000919085.1 F0F1 ATP synthase subunit gamma -
  QOR54_RS04855 atpD 896127..897533 (+) 1407 WP_000094375.1 F0F1 ATP synthase subunit beta -
  QOR54_RS04860 - 897546..897959 (+) 414 WP_000068054.1 F0F1 ATP synthase subunit epsilon -
  QOR54_RS04865 - 898024..898254 (+) 231 WP_000602601.1 DUF1146 family protein -
  QOR54_RS04870 murA 898317..899588 (+) 1272 WP_000357877.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QOR54_RS04875 - 899590..899781 (+) 192 WP_000168511.1 DNA-directed RNA polymerase subunit beta -
  QOR54_RS04880 endA 899856..900713 (+) 858 WP_000163020.1 DNA/RNA non-specific endonuclease Machinery gene
  QOR54_RS04885 - 900817..901950 (+) 1134 WP_000564846.1 ISAs1-like element IS1548 family transposase -
  QOR54_RS04890 pheS 902331..903371 (+) 1041 WP_000365659.1 phenylalanine--tRNA ligase subunit alpha -
  QOR54_RS04895 - 903454..903975 (+) 522 WP_000078400.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31352.34 Da        Isoelectric Point: 10.4835

>NTDB_id=1044095 QOR54_RS04880 WP_000163020.1 899856..900713(+) (endA) [Streptococcus agalactiae isolate MRI Z2-342]
MTKKQKQITASIVTLLFSLLAIGLGESKSLPNDHILKQVTDLIISNESGKNTSLKNVSGTPSRELSESVLTSNVKKQLGT
NIAWNQSGAFIINQNKTDLNAKVSSAPYAINEIKKVNNQIVPTKANALLTKATRQYRNREETGNGRTYWKPAGWHQINGL
KGSYNHAVDRGHLIGYALVGSLRGFDASTSNPKNIATQAAWANQANSNQSTGQNYYETLVRKALDRHKTVRYRVTLIYDR
DNLLSSGSHIEAKSSDGSLEFNVFIPNVQSGLLFDYATGKVKQTK

Nucleotide


Download         Length: 858 bp        

>NTDB_id=1044095 QOR54_RS04880 WP_000163020.1 899856..900713(+) (endA) [Streptococcus agalactiae isolate MRI Z2-342]
ATGACAAAAAAACAAAAACAAATAACAGCTTCGATTGTAACTTTGCTTTTTTCATTACTGGCAATAGGGTTAGGTGAAAG
CAAATCTTTGCCTAATGATCACATTTTAAAACAGGTGACAGATTTAATTATTAGTAATGAATCTGGCAAAAATACTTCCC
TTAAAAATGTATCAGGAACTCCTAGTAGAGAGTTATCTGAATCTGTTTTGACTAGCAATGTTAAAAAACAATTGGGAACA
AATATAGCTTGGAACCAGTCAGGTGCTTTTATCATTAATCAAAATAAAACAGATTTGAATGCTAAAGTGTCAAGTGCACC
ATATGCTATTAATGAAATAAAGAAGGTTAATAACCAAATTGTTCCGACTAAAGCAAATGCCTTATTAACAAAAGCAACTC
GTCAATATCGAAATCGAGAAGAAACAGGGAATGGTAGAACTTATTGGAAACCAGCTGGATGGCATCAGATAAATGGATTA
AAAGGGAGCTATAACCACGCTGTGGACAGAGGCCATTTAATTGGTTATGCTTTAGTAGGGAGTTTAAGAGGATTTGATGC
CTCCACAAGTAATCCTAAAAATATTGCCACACAAGCAGCTTGGGCAAACCAAGCTAATAGCAACCAATCAACAGGGCAAA
ATTATTATGAAACTTTAGTTCGTAAAGCATTGGATCGTCATAAAACTGTTAGGTATCGTGTGACTTTAATTTATGACAGA
GATAATCTTTTATCTTCGGGATCACATATTGAGGCTAAATCTTCAGATGGAAGTTTAGAATTTAACGTTTTTATTCCTAA
TGTACAATCGGGATTATTATTTGATTATGCAACAGGAAAAGTGAAGCAGACAAAGTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(87-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E067

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.379

81.404

0.54
  endA Streptococcus pneumoniae D39

66.379

81.404

0.54
  endA Streptococcus pneumoniae R6

66.379

81.404

0.54
  endA Streptococcus pneumoniae TIGR4

66.379

81.404

0.54

Multiple sequence alignment