Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QOR61_RS04255 Genome accession   NZ_OX460960
Coordinates   761427..762212 (+) Length   261 a.a.
NCBI ID   WP_000825433.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-299     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 756427..767212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR61_RS11985 - 757545..758255 (+) 711 Protein_750 ABC transporter permease -
  QOR61_RS04240 - 758439..758897 (+) 459 WP_323128298.1 FtsX-like permease family protein -
  QOR61_RS04245 - 758994..759665 (+) 672 WP_000891266.1 ABC transporter ATP-binding protein -
  QOR61_RS04250 - 759722..761167 (-) 1446 WP_283572442.1 FAD/NAD(P)-binding protein -
  QOR61_RS04255 endA 761427..762212 (+) 786 WP_000825433.1 DNA/RNA non-specific endonuclease Machinery gene
  QOR61_RS04260 - 762290..762928 (-) 639 WP_000478529.1 VTT domain-containing protein -
  QOR61_RS04265 - 763145..763801 (+) 657 WP_000121096.1 ATP-binding cassette domain-containing protein -
  QOR61_RS04270 fetB 763798..764571 (+) 774 WP_000011928.1 iron export ABC transporter permease subunit FetB -
  QOR61_RS04275 - 764735..765553 (+) 819 WP_000601005.1 hypothetical protein -
  QOR61_RS04280 - 765590..766474 (-) 885 WP_000354839.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29378.79 Da        Isoelectric Point: 8.9989

>NTDB_id=1043974 QOR61_RS04255 WP_000825433.1 761427..762212(+) (endA) [Streptococcus agalactiae isolate MRI Z2-299]
MKRLHKLFITVIATLGMLGVMTFGLPTQPQNVTPIVHADVNSSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLN
ADVNVKAYVQNTIDNQQRPSAANAMLDRTIRQYQNRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGHLIAYALAGNFKG
WDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNV
AIPNTQASYTMDYATGEITLN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=1043974 QOR61_RS04255 WP_000825433.1 761427..762212(+) (endA) [Streptococcus agalactiae isolate MRI Z2-299]
ATGAAAAGATTACATAAACTGTTTATAACCGTAATTGCTACATTAGGTATGTTGGGGGTAATGACCTTTGGTCTTCCAAC
GCAGCCGCAAAACGTAACACCGATAGTACATGCTGATGTCAATTCATCTGTTGATACGAGCCAGGAATTTCAAAATAATT
TAAAAAATGCTATTGGTAACCTACCATTTCAATATGTTAATGGTATTTATGAATTAAATAATAATCAGACAAATTTAAAT
GCTGATGTCAATGTTAAAGCGTATGTTCAAAATACAATTGACAATCAACAAAGACCATCAGCTGCTAATGCAATGCTTGA
TAGAACCATTCGTCAATATCAAAATCGCAGAGATACCACTCTTCCCGATGCAAATTGGAAACCATTAGGTTGGCATCAAG
TAGCTACTAATGACCATTATGGGCATGCAGTCGACAAGGGGCATTTAATTGCCTATGCTTTAGCTGGAAATTTCAAAGGC
TGGGATGCTTCCGTGTCAAATCCTCAAAATGTTGTCACACAAACAGCTCATTCCAACCAATCAAATCAAAAAATCAATCG
TGGACAAAATTATTATGAAAGCTTAGTTCGTAAGGCGGTTGACCAAAACAAACGTGTTCGTTACCGTGTAACTCCATTGT
ACCGTAATGATACTGATTTAGTTCCATTTGCAATGCACCTAGAAGCTAAATCACAAGATGGCACATTAGAATTTAATGTT
GCTATTCCAAACACACAAGCATCATATACTATGGATTATGCAACAGGAGAAATAACACTAAATTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(77-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

52.02

75.862

0.395
  endA Streptococcus pneumoniae D39

52.02

75.862

0.395
  endA Streptococcus pneumoniae R6

52.02

75.862

0.395
  endA Streptococcus pneumoniae TIGR4

52.02

75.862

0.395