Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   QOR61_RS01145 Genome accession   NZ_OX460960
Coordinates   196997..197296 (+) Length   99 a.a.
NCBI ID   WP_001872488.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-299     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 191997..202296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR61_RS01115 - 192302..192667 (+) 366 WP_000285374.1 DUF1033 family protein -
  QOR61_RS01120 - 192897..194357 (+) 1461 WP_000468685.1 IS1182-like element IS1563 family transposase -
  QOR61_RS01125 comGA 194403..195374 (+) 972 WP_000250798.1 competence type IV pilus ATPase ComGA Machinery gene
  QOR61_RS01130 comGB 195268..196311 (+) 1044 WP_283572579.1 competence type IV pilus assembly protein ComGB Machinery gene
  QOR61_RS01135 comGC/cglC 196308..196637 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  QOR61_RS01140 comGD 196612..197025 (+) 414 WP_000244259.1 competence type IV pilus minor pilin ComGD Machinery gene
  QOR61_RS01145 comGE 196997..197296 (+) 300 WP_001872488.1 competence type IV pilus minor pilin ComGE Machinery gene
  QOR61_RS01150 comGF 197250..197711 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  QOR61_RS01155 comGG 197689..198060 (+) 372 WP_000601101.1 competence type IV pilus minor pilin ComGG Machinery gene
  QOR61_RS01160 comGH 198175..199149 (+) 975 WP_001008569.1 class I SAM-dependent methyltransferase Machinery gene
  QOR61_RS01165 - 199181..200374 (+) 1194 WP_000047534.1 acetate kinase -
  QOR61_RS01170 - 200502..200694 (+) 193 Protein_177 helix-turn-helix transcriptional regulator -
  QOR61_RS01175 - 200673..200939 (+) 267 Protein_178 hypothetical protein -
  QOR61_RS01180 - 201008..201673 (+) 666 WP_000008108.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11222.33 Da        Isoelectric Point: 10.6118

>NTDB_id=1043946 QOR61_RS01145 WP_001872488.1 196997..197296(+) (comGE) [Streptococcus agalactiae isolate MRI Z2-299]
MVIIVRKKIRAYILLESLVGLAILVTITSLVISEINRQQSHIARRQHEQEVLILARMAVQTDQKILEANGVNIRIEESKN
KIALFEGNKEILHVSKVKG

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1043946 QOR61_RS01145 WP_001872488.1 196997..197296(+) (comGE) [Streptococcus agalactiae isolate MRI Z2-299]
GTGGTAATTATCGTAAGAAAGAAAATTAGAGCCTATATTTTACTGGAAAGCCTAGTGGGATTAGCTATTTTAGTTACTAT
TACAAGTTTAGTAATAAGTGAAATCAATCGTCAACAATCTCATATTGCAAGAAGGCAACATGAGCAAGAAGTATTGATAT
TAGCTAGAATGGCTGTGCAAACTGATCAAAAAATATTAGAAGCAAATGGTGTTAATATTCGTATTGAAGAAAGTAAAAAT
AAAATTGCGCTCTTTGAAGGTAATAAGGAAATTTTGCACGTATCAAAAGTTAAGGGTTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

38.542

96.97

0.374
  comGE Streptococcus mutans UA159

38.542

96.97

0.374

Multiple sequence alignment