Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   PGK76_RS03325 Genome accession   NZ_CP168322
Coordinates   717316..719046 (+) Length   576 a.a.
NCBI ID   WP_253037591.1    Uniprot ID   A0AAP6LND5
Organism   Riemerella anatipestifer strain RCAD0866     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 712316..724046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGK76_RS03310 (PGK76_003310) - 713864..715057 (+) 1194 WP_004918219.1 endonuclease/exonuclease/phosphatase family protein -
  PGK76_RS03315 (PGK76_003315) - 715162..716790 (+) 1629 WP_004918222.1 acyl-CoA carboxylase subunit beta -
  PGK76_RS03320 (PGK76_003320) - 716790..717227 (+) 438 WP_004918223.1 hypothetical protein -
  PGK76_RS03325 (PGK76_003325) comEC 717316..719046 (+) 1731 WP_253037591.1 ComEC/Rec2 family competence protein Machinery gene
  PGK76_RS03330 (PGK76_003330) - 719207..719869 (+) 663 WP_154469462.1 succinate dehydrogenase cytochrome b subunit -
  PGK76_RS03335 (PGK76_003335) - 719932..721944 (+) 2013 WP_013446917.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  PGK76_RS03340 (PGK76_003340) - 721968..722738 (+) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  PGK76_RS03345 (PGK76_003345) dinB 722824..723906 (+) 1083 WP_161399234.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 67239.65 Da        Isoelectric Point: 10.2902

>NTDB_id=1043832 PGK76_RS03325 WP_253037591.1 717316..719046(+) (comEC) [Riemerella anatipestifer strain RCAD0866]
MKKQILFSLFISFSLGVFLQDLNGFSWQNLNIIAILGVISLGLIWAKADWVVRIRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFHQNQPFKAVLSVPKDLEELDYKHYYQSQLSLYPLESSKNNYQFDYAKFQ
ARKGVHYRVYAKDLRKAPKSELTFSEKMKQWRLEFLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAGTSSNFRRSGLAHI
LAISGTHIAIIFGVVYMLLRLVLPVRFRIGVILLSLSLIWAFAWFIGWGNSVVRSCIMLTVYFGFVLLQRKPQVLDSLAL
AGLGILIVDTQELFSVGFQLSFSAVLGIYWFNRPMIRLFPNPRNKIQKLLLYTFTMSTAAQLGTMPIVIYYFHQYSAWSI
LANLLVLPLMEIVIILSFLMTIVFGLGIYWNWLSFTYDWLIKALLRLIGFFGKIEIGSFQDIPLSIWEMGIWAVGLYFLR
EILIRFTWRGFMRLMFSVLLFFGIKMWLDIRAYHDKEAKWHYHYRTKVFSVLDKGKVCFWVADEDNLETLESNLIKPYVI
SKRAKSYKIKMMSRSK

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1043832 PGK76_RS03325 WP_253037591.1 717316..719046(+) (comEC) [Riemerella anatipestifer strain RCAD0866]
GTGAAAAAGCAAATTCTTTTTAGTCTGTTTATAAGTTTTTCATTAGGTGTCTTTTTGCAAGACCTTAATGGGTTCTCGTG
GCAAAATCTCAATATTATAGCTATATTGGGGGTTATTAGTCTTGGGTTAATTTGGGCGAAAGCAGATTGGGTAGTTCGAA
TTAGAATTTGGTTACTCAATATCTTTTTTCTCTGTTTTGGAGTATTTACTCATTACCTTAATTCGGAAAAATCAGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAGCTTGTTTTTAAAATTGAGCAAAAGCTGAATTCAACGGCTAAAAACAAACGCTATGA
AATAACAGCATTTCATCAAAATCAACCTTTTAAAGCAGTTTTATCTGTTCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTACTATCAGTCTCAACTAAGTCTATATCCGTTGGAGTCTTCCAAGAATAATTACCAGTTTGATTATGCCAAATTTCAA
GCAAGGAAAGGTGTGCATTACAGGGTTTATGCCAAAGATTTACGCAAAGCTCCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACAATGGCGATTGGAATTCCTTAGTAATATAGATAAAAACGAAAAACTTTCACAGCAAACTAGAGCTTTCCTAA
AAGGAATTGTATTAGCCGATAGAACAGAGGTAGATGCAGGAACTAGTTCCAATTTTAGGCGAAGTGGCTTGGCACATATT
TTGGCTATTTCGGGGACGCACATAGCAATTATATTCGGAGTGGTCTATATGCTGTTGAGGTTAGTGTTACCTGTTAGATT
TCGGATTGGCGTAATATTACTTAGTTTGTCGTTAATTTGGGCTTTTGCTTGGTTTATTGGTTGGGGAAATTCTGTTGTTA
GGTCTTGTATCATGCTCACCGTTTATTTTGGTTTTGTCCTTCTGCAAAGGAAACCGCAAGTTTTGGATTCTTTAGCCTTG
GCAGGATTAGGGATTTTGATAGTGGATACACAAGAGTTGTTTTCGGTGGGATTTCAATTGAGTTTTTCGGCAGTATTGGG
AATTTATTGGTTTAATAGACCTATGATTCGTCTTTTTCCAAATCCTAGAAACAAAATTCAAAAACTATTGCTTTATACTT
TCACGATGTCCACGGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCAGCGTGGTCTATT
TTGGCTAATCTTTTAGTCCTTCCTTTAATGGAAATTGTGATTATACTATCGTTTTTAATGACGATTGTTTTTGGTTTAGG
GATTTATTGGAATTGGCTATCTTTTACTTATGATTGGCTAATTAAAGCGTTGCTACGGCTGATAGGTTTCTTTGGTAAAA
TAGAGATAGGGTCTTTTCAAGACATACCGTTGAGTATTTGGGAGATGGGTATTTGGGCGGTAGGGCTTTATTTTCTAAGA
GAAATATTGATTCGTTTTACATGGAGAGGTTTTATGAGGTTGATGTTTTCTGTGCTTTTATTTTTCGGGATTAAAATGTG
GCTAGATATCAGAGCTTATCACGATAAAGAAGCAAAGTGGCATTACCATTATCGTACTAAAGTGTTCTCTGTTTTGGATA
AAGGTAAGGTGTGCTTTTGGGTGGCGGATGAAGATAATTTAGAAACGTTAGAAAGTAATCTCATAAAGCCTTATGTGATT
TCTAAAAGAGCTAAAAGTTATAAAATAAAAATGATGTCTAGAAGTAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(216-479)

Domain of unknown function (DUF4131) (DUF4131)

(30-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

96.87

99.826

0.967

Multiple sequence alignment