Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACD268_RS09375 Genome accession   NZ_CP168299
Coordinates   1831751..1833652 (-) Length   633 a.a.
NCBI ID   WP_330789305.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FC1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1826751..1838652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD268_RS09325 (ACD268_09325) - 1826898..1827659 (-) 762 WP_001107745.1 SDR family NAD(P)-dependent oxidoreductase -
  ACD268_RS09330 (ACD268_09330) ytpR 1827692..1828318 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  ACD268_RS09335 (ACD268_09335) - 1828334..1828651 (-) 318 WP_000615767.1 thioredoxin family protein -
  ACD268_RS09340 (ACD268_09340) - 1828648..1828947 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  ACD268_RS09345 (ACD268_09345) - 1829145..1829207 (-) 63 WP_219300018.1 hypothetical protein -
  ACD268_RS09350 (ACD268_09350) - 1829232..1829423 (-) 192 WP_000291826.1 cell wall-binding protein -
  ACD268_RS09355 (ACD268_09355) - 1829584..1830258 (-) 675 WP_000725719.1 hypothetical protein -
  ACD268_RS09360 (ACD268_09360) - 1830263..1830709 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  ACD268_RS09365 (ACD268_09365) - 1830823..1831326 (-) 504 WP_044789202.1 phosphatase PAP2 family protein -
  ACD268_RS09370 (ACD268_09370) - 1831323..1831685 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  ACD268_RS09375 (ACD268_09375) rcrP 1831751..1833652 (-) 1902 WP_330789305.1 ABC transporter ATP-binding protein/permease Regulator
  ACD268_RS09380 (ACD268_09380) - 1833627..1834098 (-) 472 Protein_1836 MarR family winged helix-turn-helix transcriptional regulator -
  ACD268_RS09385 (ACD268_09385) - 1834222..1834938 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACD268_RS09390 (ACD268_09390) ply 1835819..1837234 (-) 1416 WP_214328117.1 cholesterol-dependent cytolysin pneumolysin -
  ACD268_RS09395 (ACD268_09395) - 1837245..1837655 (-) 411 WP_000595758.1 hypothetical protein -
  ACD268_RS09400 (ACD268_09400) - 1837648..1838256 (-) 609 WP_000083614.1 hypothetical protein -

Sequence

Protein


Download         Length: 633 a.a.        Molecular weight: 70619.92 Da        Isoelectric Point: 4.8332

>NTDB_id=1043734 ACD268_RS09375 WP_330789305.1 1831751..1833652(-) (rcrP) [Streptococcus pneumoniae strain FC1]
MKKLAKRISRKEWGMILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMPFLAFLSVVAVGFFAS
RVAASYISRLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWA
VLVAVIVNVLMTTVLMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMVI
LNPIMMGISSGLSVAIYWIGAYVINDAAPIARLPLFSDMIVFMSYAMQVVTDFLLMGALFIVLPRTMVSAKRINQVLDLH
SSIQNPAQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTVAFIGSIGSGKSTLVNLIPRFYDVSAGEILV
DGVNVQDYDFSATAHAGQRVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRIDGVDTKAMTRSEVHDAFSMVLQDTWLFEGT
IRDNLIYDQIEISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTR
TEELIQKVMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEELMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1902 bp        

>NTDB_id=1043734 ACD268_RS09375 WP_330789305.1 1831751..1833652(-) (rcrP) [Streptococcus pneumoniae strain FC1]
ATAAAGAAATTAGCCAAAAGAATTAGTAGAAAAGAATGGGGGATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGT
CTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTACGGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGT
TGTGGCAGCCGGCAAGCATGATGATGGGAATGCCCTTTCTTGCCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCC
CGAGTGGCGGCTTCTTATATTAGTAGGCTGAGAAGTGATATTTTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAA
GAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGACATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGC
AAGTGGTAACGCGTGGTCCAATTATGGCTATCTGGGCTATTGGGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCC
GTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTTTTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCA
GGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTTAACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGG
ATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGACCCGTTTAAATTTGTTTGTCAACCGTCTTATGGTTATT
TTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTGGCGATTTACTGGATTGGGGCCTATGTGATTAACGACGC
TGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGTTTTCATGTCTTATGCCATGCAGGTTGTCACGGACTTCC
TTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCAT
TCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGGATGTGACCTT
CCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTGGCCTTTATTG
GGTCAATAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGAAATTCTGGTG
GACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAGGGTTGCCATTGTTGGGCCGACTGG
GGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATTGATGGTGTGG
ATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTTTGAAGGAACT
ATTCGAGACAATCTCATCTATGATCAAATAGAGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTGTGGGAATTCA
CCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGACAAAAACAAC
TATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGTTGACACACGG
ACAGAGGAATTGATCCAAAAAGTCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACCGCTTGTCAAC
CATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAACTGATGGCGC
AAGGTGGATTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-291)

ABC transporter (ABC_tran)

(410-555)

ABC transporter (ABC_tran)

(358-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.068

100

0.482
  rcrQ Streptococcus mutans UA159

40.615

97.63

0.397

Multiple sequence alignment