Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8628_RS07045 Genome accession   NZ_AP028335
Coordinates   1346466..1346981 (-) Length   171 a.a.
NCBI ID   WP_038816943.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10174     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1341466..1351981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8628_RS07030 (B10174_13870) - 1341540..1343261 (-) 1722 WP_052816855.1 flagellin A -
  R8628_RS07035 (B10174_13880) - 1343356..1345206 (-) 1851 WP_052773650.1 motility associated factor glycosyltransferase family protein -
  R8628_RS07040 (B10174_13890) - 1345216..1346466 (-) 1251 WP_002903861.1 DUF2920 family protein -
  R8628_RS07045 (B10174_13900) ctsG 1346466..1346981 (-) 516 WP_038816943.1 type II secretion system protein Machinery gene
  R8628_RS07050 (B10174_13910) tsaD 1346982..1347989 (-) 1008 WP_038816944.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8628_RS07055 (B10174_13920) - 1347986..1349380 (-) 1395 WP_317653327.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8628_RS07060 (B10174_13930) dxr 1349382..1350452 (-) 1071 WP_002902410.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8628_RS07065 (B10174_13940) cdsA 1350449..1351174 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  R8628_RS07070 (B10174_13950) - 1351183..1351521 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18664.58 Da        Isoelectric Point: 7.1355

>NTDB_id=104365 R8628_RS07045 WP_038816943.1 1346466..1346981(-) (ctsG) [Campylobacter jejuni strain BCH-10174]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104365 R8628_RS07045 WP_038816943.1 1346466..1346981(-) (ctsG) [Campylobacter jejuni strain BCH-10174]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAAGGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment