Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   Q433_RS07960 Genome accession   NZ_CP007409
Coordinates   1511106..1511555 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506106..1516555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q433_RS07920 (Q433_08545) ctaE 1506122..1506745 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  Q433_RS07925 (Q433_08550) ctaF 1506748..1507080 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  Q433_RS07930 (Q433_08555) ctaG 1507108..1508001 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  Q433_RS07935 (Q433_08560) ylbA 1508033..1508395 (-) 363 WP_003232238.1 YugN family protein -
  Q433_RS07940 (Q433_08565) ylbB 1508535..1508981 (+) 447 WP_003221362.1 CBS domain-containing protein -
  Q433_RS07945 (Q433_08570) ylbC 1509065..1510105 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  Q433_RS07950 (Q433_08575) ylbD 1510337..1510735 (+) 399 WP_003232233.1 YlbD family protein -
  Q433_RS07955 (Q433_08580) ylbE 1510751..1510990 (+) 240 WP_003232231.1 YlbE-like family protein -
  Q433_RS07960 (Q433_08585) ylbF 1511106..1511555 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  Q433_RS07965 (Q433_08590) ylbG 1511610..1511882 (+) 273 WP_015715839.1 YlbG family protein -
  Q433_RS07970 (Q433_08600) rsmD 1512205..1512759 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Q433_RS07975 (Q433_08605) coaD 1512764..1513249 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  Q433_RS07980 (Q433_08610) spoVV 1513260..1514486 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  Q433_RS07985 (Q433_08615) ylbK 1514667..1515449 (+) 783 WP_038427648.1 patatin family protein -
  Q433_RS07990 (Q433_08620) sepM 1515451..1516476 (+) 1026 WP_029726516.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=104346 Q433_RS07960 WP_003221370.1 1511106..1511555(+) (ylbF) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=104346 Q433_RS07960 WP_003221370.1 1511106..1511555(+) (ylbF) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment