Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8918_RS06870 Genome accession   NZ_AP028332
Coordinates   1318597..1319112 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain BCH-10155     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1313597..1324112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8918_RS06855 (B10155_13530) - 1313711..1315525 (-) 1815 WP_317726031.1 motility associated factor glycosyltransferase family protein -
  R8918_RS06860 (B10155_13540) - 1315522..1317345 (-) 1824 WP_317726032.1 motility associated factor glycosyltransferase family protein -
  R8918_RS06865 - 1317355..1318597 (-) 1243 Protein_1332 DUF2920 family protein -
  R8918_RS06870 (B10155_13570) ctsG 1318597..1319112 (-) 516 WP_002799196.1 type II secretion system protein Machinery gene
  R8918_RS06875 (B10155_13580) tsaD 1319113..1320120 (-) 1008 WP_131234772.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8918_RS06880 (B10155_13590) - 1320117..1321511 (-) 1395 WP_238046678.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8918_RS06885 (B10155_13600) dxr 1321513..1322583 (-) 1071 WP_002860792.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8918_RS06890 (B10155_13610) cdsA 1322580..1323305 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  R8918_RS06895 (B10155_13620) - 1323314..1323652 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=104338 R8918_RS06870 WP_002799196.1 1318597..1319112(-) (ctsG) [Campylobacter jejuni strain BCH-10155]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104338 R8918_RS06870 WP_002799196.1 1318597..1319112(-) (ctsG) [Campylobacter jejuni strain BCH-10155]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment