Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACEL84_RS15660 Genome accession   NZ_CP168212
Coordinates   3422746..3423453 (+) Length   235 a.a.
NCBI ID   WP_261893974.1    Uniprot ID   -
Organism   Vibrio porteresiae strain MSSRF31     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3417746..3428453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEL84_RS15645 (ACEL84_15645) - 3418852..3421173 (+) 2322 WP_261893970.1 Tex family protein -
  ACEL84_RS15650 (ACEL84_15650) - 3421285..3421755 (-) 471 WP_261893971.1 ATP-dependent Lon protease -
  ACEL84_RS15655 (ACEL84_15655) bioH 3421892..3422662 (-) 771 WP_261893972.1 pimeloyl-ACP methyl ester esterase BioH -
  ACEL84_RS15660 (ACEL84_15660) comF 3422746..3423453 (+) 708 WP_261893974.1 phosphoribosyltransferase family protein Machinery gene
  ACEL84_RS15665 (ACEL84_15665) nfuA 3423548..3424135 (+) 588 WP_225250368.1 Fe-S biogenesis protein NfuA -
  ACEL84_RS15670 (ACEL84_15670) nudE 3424256..3424837 (+) 582 WP_261893975.1 ADP compounds hydrolase NudE -
  ACEL84_RS15675 (ACEL84_15675) cysQ 3424842..3425669 (+) 828 WP_261893976.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACEL84_RS15680 (ACEL84_15680) - 3425731..3426483 (-) 753 WP_261893977.1 type II secretion system protein N -
  ACEL84_RS15685 (ACEL84_15685) - 3426485..3426994 (-) 510 WP_261893979.1 type II secretion system protein M -
  ACEL84_RS15690 (ACEL84_15690) gspL 3427007..3428221 (-) 1215 WP_261893981.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27187.69 Da        Isoelectric Point: 9.0552

>NTDB_id=1043116 ACEL84_RS15660 WP_261893974.1 3422746..3423453(+) (comF) [Vibrio porteresiae strain MSSRF31]
MVSNWLQKTIRSLSPAQCHLCRLPLAATDQHYFCQACLMQFPVIPRCKRCGLVTTKPVEQCGRCLKKPPIWHSLSCIGDY
HYPLSQLTHQFKYQRAFWLAPPLSQLLTQHIGEPAPVITAVPLHWRRYLWRGFNQSDLLARQLSQQMNCEYWPFLFHRTR
ATPHQQGLSRHQRLTNLKGAFYLHSLPYPVEHVAIVDDVVTTGSTVKQLCRLLLDVGVQRVDIYCLCRTPEPTDS

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1043116 ACEL84_RS15660 WP_261893974.1 3422746..3423453(+) (comF) [Vibrio porteresiae strain MSSRF31]
ATGGTATCGAATTGGCTACAAAAAACCATCCGCTCACTCTCTCCCGCGCAGTGCCATTTGTGCCGCTTGCCTTTAGCTGC
CACCGATCAACACTACTTTTGCCAAGCATGCTTAATGCAATTCCCTGTGATTCCTCGTTGCAAACGGTGTGGGCTGGTGA
CCACAAAACCGGTAGAACAATGCGGCCGCTGCCTGAAAAAGCCGCCTATCTGGCACTCATTATCCTGCATTGGTGATTAT
CACTACCCATTAAGCCAGCTTACTCACCAATTCAAATATCAGCGCGCGTTTTGGTTAGCGCCACCACTTTCTCAATTACT
CACGCAACACATTGGTGAACCTGCCCCCGTGATTACTGCGGTACCACTCCATTGGCGTCGTTATCTTTGGCGCGGTTTTA
ATCAGAGCGATCTACTTGCTCGACAATTGAGTCAACAGATGAATTGTGAATATTGGCCTTTTCTATTTCACCGCACACGA
GCCACACCACATCAACAAGGACTGTCGCGCCATCAAAGGCTCACCAACTTAAAAGGGGCTTTCTATCTGCATTCTCTCCC
TTATCCGGTTGAGCATGTTGCTATTGTTGATGATGTCGTGACCACAGGCAGCACAGTGAAACAATTGTGTCGCTTATTAC
TTGATGTTGGCGTGCAAAGAGTGGATATTTACTGCCTATGTCGCACTCCTGAACCAACCGATTCTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.723

100

0.587
  comF Vibrio campbellii strain DS40M4

45.607

100

0.464

Multiple sequence alignment