Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8663_RS06615 Genome accession   NZ_AP028331
Coordinates   1285231..1285746 (-) Length   171 a.a.
NCBI ID   WP_060809752.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10091     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280231..1290746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8663_RS06600 (B10091_13100) - 1280342..1282159 (-) 1818 WP_317675934.1 motility associated factor glycosyltransferase family protein -
  R8663_RS06605 (B10091_13110) - 1282156..1283979 (-) 1824 WP_317675935.1 motility associated factor glycosyltransferase family protein -
  R8663_RS06610 (B10091_13120) - 1283996..1285231 (-) 1236 Protein_1281 DUF2920 family protein -
  R8663_RS06615 (B10091_13130) ctsG 1285231..1285746 (-) 516 WP_060809752.1 type II secretion system protein Machinery gene
  R8663_RS06620 (B10091_13140) tsaD 1285747..1286754 (-) 1008 WP_057044126.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8663_RS06625 (B10091_13150) - 1286751..1288145 (-) 1395 WP_100621118.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8663_RS06630 (B10091_13160) dxr 1288147..1289217 (-) 1071 WP_002859634.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8663_RS06635 (B10091_13170) cdsA 1289214..1289939 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  R8663_RS06640 (B10091_13180) - 1289948..1290286 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18680.53 Da        Isoelectric Point: 6.4682

>NTDB_id=104310 R8663_RS06615 WP_060809752.1 1285231..1285746(-) (ctsG) [Campylobacter jejuni strain BCH-10091]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=104310 R8663_RS06615 WP_060809752.1 1285231..1285746(-) (ctsG) [Campylobacter jejuni strain BCH-10091]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTAGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATCGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment