Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   QOR55_RS09710 Genome accession   NZ_OX460911
Coordinates   1915108..1916376 (+) Length   422 a.a.
NCBI ID   WP_000774763.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1910108..1921376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR55_RS09665 - 1910248..1910712 (-) 465 WP_306768180.1 MepB family protein -
  QOR55_RS09670 - 1910830..1911546 (+) 717 WP_000859570.1 MerR family transcriptional regulator -
  QOR55_RS09675 - 1911585..1912055 (-) 471 WP_000631756.1 GNAT family N-acetyltransferase -
  QOR55_RS09680 - 1912027..1912484 (-) 458 Protein_1832 NUDIX hydrolase -
  QOR55_RS09685 - 1912477..1912785 (-) 309 WP_001868493.1 hypothetical protein -
  QOR55_RS09690 - 1912828..1913298 (-) 471 WP_001051342.1 DUF3013 family protein -
  QOR55_RS09695 - 1913372..1913899 (-) 528 WP_001031089.1 DUF3278 domain-containing protein -
  QOR55_RS09700 - 1913902..1914090 (-) 189 WP_001082463.1 helix-turn-helix domain-containing protein -
  QOR55_RS09705 - 1914624..1915115 (+) 492 WP_001883431.1 GNAT family N-acetyltransferase -
  QOR55_RS09710 rarA 1915108..1916376 (+) 1269 WP_000774763.1 replication-associated recombination protein A Machinery gene
  QOR55_RS09720 - 1916885..1917739 (-) 855 WP_001204139.1 aminoglycoside 6-adenylyltransferase -
  QOR55_RS09725 - 1918108..1918704 (+) 597 WP_000846439.1 AAA family ATPase -
  QOR55_RS09730 - 1918739..1919296 (-) 558 WP_000207508.1 histidine phosphatase family protein -
  QOR55_RS09735 - 1919333..1919668 (-) 336 WP_000827863.1 helix-turn-helix transcriptional regulator -
  QOR55_RS09740 - 1920190..1920678 (-) 489 WP_000403109.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46584.00 Da        Isoelectric Point: 6.5117

>NTDB_id=1043071 QOR55_RS09710 WP_000774763.1 1915108..1916376(+) (rarA) [Streptococcus agalactiae isolate MRI Z2-322]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNAKDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1043071 QOR55_RS09710 WP_000774763.1 1915108..1916376(+) (rarA) [Streptococcus agalactiae isolate MRI Z2-322]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGACAACAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGACCACCAGGTATCGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATCCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAA
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAAGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59

Multiple sequence alignment