Detailed information NTG1042612

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACEF29_RS08490
• Genome accession: NZ_CP168150
• Coordinates: 1674835..1675614 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain CM19
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1669835..1680614

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEF29_RS08470 (ACEF29_08470)	trmFO	1670522..1671829 (+)	1308	WP_032871468.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACEF29_RS08475 (ACEF29_08475)	xerC	1671899..1672816 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACEF29_RS08480 (ACEF29_08480)	hslV	1672832..1673377 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACEF29_RS08485 (ACEF29_08485)	hslU	1673394..1674797 (+)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
ACEF29_RS08490 (ACEF29_08490)	codY	1674835..1675614 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACEF29_RS08495 (ACEF29_08495)	flgB	1675968..1676357 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACEF29_RS08500 (ACEF29_08500)	flgC	1676357..1676809 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
ACEF29_RS08505 (ACEF29_08505)	fliE	1676820..1677140 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACEF29_RS08510 (ACEF29_08510)	fliF	1677183..1678793 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
ACEF29_RS08515 (ACEF29_08515)	fliG	1678806..1679822 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACEF29_RS08520 (ACEF29_08520)	fliH	1679815..1680570 (+)	756	WP_053573438.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1042612 ACEF29_RS08490 WP_003154263.1 1674835..1675614(+) (codY) [Bacillus velezensis strain CM19]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1042612 ACEF29_RS08490 WP_003154263.1 1674835..1675614(+) (codY) [Bacillus velezensis strain CM19]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471