Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACDZ29_RS01560 Genome accession   NZ_CP168135
Coordinates   282164..284572 (-) Length   802 a.a.
NCBI ID   WP_375089588.1    Uniprot ID   -
Organism   Peribacillus sp. RS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 277164..289572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ29_RS01535 (ACDZ29_01530) - 278599..279675 (-) 1077 WP_375089583.1 AI-2E family transporter -
  ACDZ29_RS01540 (ACDZ29_01535) - 279903..280118 (-) 216 WP_370015893.1 hypothetical protein -
  ACDZ29_RS01545 (ACDZ29_01540) - 280108..280566 (-) 459 WP_370015894.1 PRC-barrel domain-containing protein -
  ACDZ29_RS01550 (ACDZ29_01550) - 280713..281486 (-) 774 WP_375089586.1 TPM domain-containing protein -
  ACDZ29_RS01555 (ACDZ29_01555) - 281486..282055 (-) 570 WP_375091084.1 LemA family protein -
  ACDZ29_RS01560 (ACDZ29_01560) recD2 282164..284572 (-) 2409 WP_375089588.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACDZ29_RS01565 (ACDZ29_01565) - 284609..285274 (-) 666 WP_375091085.1 tetratricopeptide repeat protein -
  ACDZ29_RS01570 (ACDZ29_01570) mnmA 285396..286511 (-) 1116 WP_289315576.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACDZ29_RS01575 (ACDZ29_01575) - 286541..287686 (-) 1146 WP_370015901.1 cysteine desulfurase family protein -
  ACDZ29_RS01580 (ACDZ29_01580) cymR 287748..288167 (-) 420 WP_034308657.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 802 a.a.        Molecular weight: 90464.19 Da        Isoelectric Point: 4.8745

>NTDB_id=1042444 ACDZ29_RS01560 WP_375089588.1 282164..284572(-) (recD2) [Peribacillus sp. RS7]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHARFG
LQFHVEHFRKDLPQSKQGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGKLEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASDCVPTVSLEHIYRQADGSSIIELAHDIKKGRLPDDVTKQQEDRSFIRCQTGQIAQ
VIEKVVANARTKGFTARDIQVLAPMYRGPAGIDALNKMLQEVFNGNADEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEDRPVEKGDVHAPEASYLDTLMHADPMIGMESVTPYD
FM

Nucleotide


Download         Length: 2409 bp        

>NTDB_id=1042444 ACDZ29_RS01560 WP_375089588.1 282164..284572(-) (recD2) [Peribacillus sp. RS7]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAGGAGAAAATGTTCATGAAAGGAAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTAAGAATTCGTGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCTGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCGATGAAGGAACATGCGCGTTTTGGC
CTTCAATTTCATGTGGAGCATTTCCGTAAGGATTTGCCTCAATCCAAGCAAGGGATCGTCAGTTATTTATCCGGTGATCT
TTTCAAGGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGAGACACTAGGGGAAAAGGCAATTTCCAAAATTCTGGCTC
AGCCTTCGTTACTTGATGATATCCCGAAGCTATCAGGGGAAAAGGCAAAGGGCCTCTATGATACATTAGTCGAGCATCAG
GGTTTGGAGCAGGTGATGATCGCCCTGAATCAATATGGCTTTGGACCACAGTTGTCGATGAAGATTTATCAAATGTATAA
ACAGGATACGATCACGATGGTTCAGGGAAATCCTTATAAGCTCGTGGAGGATATTGAAGGGATTGGTTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTTGGCATTTCCGGCAGCCATCCCGACCGAATCAAGGCTGCGTGCTTGTATACACTTGAATCA
CAATGCCTCCAGGATGGAAATATCTACATAGAAGCCGAGCAGTTATTGGAAGCGGTCAAGCGACTGCTTGAGGAAAATAA
ACGGGATCGCATTGAATTCACAAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGAAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCACTATTCTATTCCGAAAAGGGAATCGTCATGAACATCAAGCGGCTGCTTGCTCAAACGGAG
TATGAGGACCAGTTCCCGGAATCGGAGTTTTTGCTGGCACTTGGGAAGCTGGAAGAGCGGCTTGATGTTTCCTACGCCCC
GGCCCAAAAGGAAGCGATACAAACAGCCCTGCAGTCCCCCATGTTAATCTTGACGGGGGGACCGGGTACCGGTAAGACGA
CGGTGATCAAAGGAATTGTTGAGCTTTATGCGGAGCTGCATGGTGTATCCATGGACATTAACGATTATAAAAAAGAAGGA
AGCGATCCATTTCCATTCGTACTTGCGGCTCCTACTGGCCGAGCAGCGAAACGCATGGCCGAATCGACTGGACTTCCCGC
TGTTACGATCCACCGTTTGCTGGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGTTGGATGGGCGGA
TCGTGATCATCGATGAGGTTTCCATGGTAGATACGTGGCTGGCCCATCAATTGTTTAAAGCCTTGCCGGAAAATGTCCAA
GTGATATTGGTGGGTGATGAAGATCAGCTGCCATCAGTCGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGGATTG
TGTACCGACTGTCAGTTTGGAACATATTTACCGTCAAGCTGACGGCTCATCGATCATTGAATTGGCCCATGACATCAAAA
AAGGAAGACTCCCGGATGATGTTACGAAGCAGCAAGAAGATCGATCGTTCATTCGCTGTCAGACCGGGCAAATCGCCCAG
GTAATCGAGAAAGTGGTTGCGAATGCCAGGACAAAGGGTTTCACGGCCAGGGATATACAGGTGCTGGCTCCGATGTATAG
GGGGCCTGCCGGGATTGATGCACTGAATAAAATGCTTCAGGAAGTGTTCAATGGCAATGCGGATGAAAAGCGGCGGGAAA
TTAAATTCGGTGACGTGATATACAGAACGGGTGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAGGGTGTCTTTAAT
GGCGATATGGGTGAAATCGTGTCCATACTGTTCGCTAAGGAAAATACCGATCATGTCGATAAAGTTATCATTTCTTTCGA
AGGTATCGAGGTGACCTACACGAAACAGGACTTGAACCAGATTACTCATGCATATTGCTGCTCCATTCATAAGTCGCAGG
GAAGCGAATTCCCCATTGTCATTTTACCTGTAGTGAAAAGTTATTATCGGATGCTTCGCCGAAATTTATTGTATACGGCA
ATTACCCGCAGTAAAAATTTCTTGATCCTTTGTGGTGAAGAGGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATTTTGAGTGAGGAAGATAGGCCGGTTGAAAAGGGAGATGTAC
ATGCGCCAGAGGCAAGTTATCTTGATACTCTCATGCATGCTGACCCGATGATCGGGATGGAAAGTGTCACCCCTTATGAT
TTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-555)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.596

100

0.616

Multiple sequence alignment