Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB9L17_RS05635 Genome accession   NZ_CP168124
Coordinates   1160176..1160955 (+) Length   259 a.a.
NCBI ID   WP_068983160.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1155176..1165955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS05615 (AB9L17_05615) trmFO 1155619..1156932 (+) 1314 WP_068983164.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB9L17_RS05620 (AB9L17_05620) xerC 1157222..1158121 (+) 900 WP_068983163.1 tyrosine recombinase XerC -
  AB9L17_RS05625 (AB9L17_05625) hslV 1158143..1158688 (+) 546 WP_068983162.1 ATP-dependent protease subunit HslV -
  AB9L17_RS05630 (AB9L17_05630) hslU 1158688..1160088 (+) 1401 WP_068983161.1 ATP-dependent protease ATPase subunit HslU -
  AB9L17_RS05635 (AB9L17_05635) codY 1160176..1160955 (+) 780 WP_068983160.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB9L17_RS05640 (AB9L17_05640) flgB 1161976..1162368 (+) 393 WP_375200182.1 flagellar basal body rod protein FlgB -
  AB9L17_RS05645 (AB9L17_05645) flgC 1162372..1162833 (+) 462 WP_375200183.1 flagellar basal body rod protein FlgC -
  AB9L17_RS05650 (AB9L17_05650) fliE 1162857..1163162 (+) 306 WP_375200184.1 flagellar hook-basal body complex protein FliE -
  AB9L17_RS05655 (AB9L17_05655) fliF 1163302..1164894 (+) 1593 WP_375200185.1 flagellar basal-body MS-ring/collar protein FliF -
  AB9L17_RS05660 (AB9L17_05660) fliG 1164910..1165923 (+) 1014 WP_068983155.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28939.19 Da        Isoelectric Point: 4.8260

>NTDB_id=1042409 AB9L17_RS05635 WP_068983160.1 1160176..1160955(+) (codY) [Bacillus sp. RS11]
MNLLEKTRKINSMLQASAGKPVNFKEMADTLGDIIDSNVYIVSRKGKLLGISIHQQIENERMKKMFEERQFPEEYTHSLF
TISETSSNLDIHDEHTAFPVENKELFQNALTTIVPIVGGGERLGTLILARLAAQFEDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAINSLSYSELEAIEHIFEELDGHEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLNALAEIKMK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1042409 AB9L17_RS05635 WP_068983160.1 1160176..1160955(+) (codY) [Bacillus sp. RS11]
ATGAATTTATTAGAAAAAACACGTAAAATTAACTCAATGCTCCAGGCATCTGCTGGTAAGCCAGTAAACTTTAAAGAAAT
GGCAGATACATTAGGAGACATTATAGACAGTAATGTATATATTGTAAGCCGTAAAGGGAAACTTTTAGGTATTTCAATTC
ATCAACAAATTGAAAACGAACGTATGAAAAAGATGTTCGAAGAGCGACAATTCCCAGAAGAATACACACATAGCTTGTTT
ACAATTTCTGAGACATCTTCAAATCTAGATATTCATGACGAACACACTGCTTTCCCGGTTGAAAACAAAGAGTTGTTCCA
AAATGCGTTAACAACTATCGTACCGATTGTTGGTGGTGGTGAGCGTCTAGGAACGTTAATTCTTGCTCGTTTAGCTGCAC
AATTTGAGGATGATGATTTAATTTTAGCTGAATATGGTGCAACAGTTGTTGGTATGGAAATTTTACGTGAGAAATCTGAG
GAAATCGAAGAGGAAGCACGTAGTAAAGCGGTTGTACAAATGGCGATAAATTCTCTTTCTTACAGTGAGTTAGAAGCTAT
TGAACATATTTTTGAAGAACTTGATGGACATGAAGGTTTACTTGTAGCTTCAAAAATTGCAGACCGAGTAGGTATTACAC
GTTCAGTAATCGTAAATGCATTACGTAAACTAGAATCTGCAGGTGTCATTGAATCGCGCTCTCTAGGTATGAAAGGTACT
TACATTAAAGTACTAAACGACAAATTCTTAAATGCATTAGCGGAAATTAAAATGAAATAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-256)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

83.658

99.228

0.83
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment