Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ABWV92_RS06175 | Genome accession | NZ_AP028322 |
| Coordinates | 1278990..1280057 (+) | Length | 355 a.a. |
| NCBI ID | WP_145334445.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain KSE124-2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1273990..1285057
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWV92_RS06145 (KSE1242_11770) | - | 1274408..1275868 (+) | 1461 | WP_145334441.1 | rhomboid family intramembrane serine protease | - |
| ABWV92_RS06150 (KSE1242_11780) | - | 1275852..1276052 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| ABWV92_RS06155 (KSE1242_11790) | - | 1276052..1277038 (+) | 987 | WP_002446536.1 | ROK family glucokinase | - |
| ABWV92_RS06160 (KSE1242_11800) | - | 1277038..1277364 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| ABWV92_RS06165 (KSE1242_11810) | - | 1277364..1277987 (+) | 624 | WP_002446535.1 | MBL fold metallo-hydrolase | - |
| ABWV92_RS06170 (KSE1242_11820) | comGA | 1278044..1279018 (+) | 975 | WP_145334443.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABWV92_RS06175 (KSE1242_11830) | comGB | 1278990..1280057 (+) | 1068 | WP_145334445.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ABWV92_RS06180 (KSE1242_11840) | comGC | 1280075..1280392 (+) | 318 | WP_002446532.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABWV92_RS06185 (KSE1242_11850) | comGD | 1280382..1280819 (+) | 438 | WP_002446531.1 | competence type IV pilus minor pilin ComGD | - |
| ABWV92_RS06190 (KSE1242_11860) | - | 1280806..1281099 (+) | 294 | WP_020367648.1 | hypothetical protein | - |
| ABWV92_RS06195 (KSE1242_11870) | comGF | 1281023..1281502 (+) | 480 | Protein_1181 | competence type IV pilus minor pilin ComGF | - |
| ABWV92_RS06200 (KSE1242_11880) | - | 1281678..1282190 (+) | 513 | WP_002457723.1 | shikimate kinase | - |
| ABWV92_RS06205 (KSE1242_11890) | gcvT | 1282408..1283499 (+) | 1092 | WP_002457722.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ABWV92_RS06210 (KSE1242_11900) | gcvPA | 1283519..1284865 (+) | 1347 | WP_002446526.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 42322.64 Da Isoelectric Point: 10.1219
>NTDB_id=104229 ABWV92_RS06175 WP_145334445.1 1278990..1280057(+) (comGB) [Staphylococcus epidermidis strain KSE124-2]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVTLISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNKFLKFLGNCLFKEANKGLPLPAILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
MKKLSINTFKYKRNKYLTEIQSIDLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVTLISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNKFLKFLGNCLFKEANKGLPLPAILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=104229 ABWV92_RS06175 WP_145334445.1 1278990..1280057(+) (comGB) [Staphylococcus epidermidis strain KSE124-2]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTACATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAACCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACAAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAA
AGGACTCCCGTTACCTGCTATATTAATGAATTTAAAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAGTTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATATTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTACATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAACCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACAAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAA
AGGACTCCCGTTACCTGCTATATTAATGAATTTAAAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAGTTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATATTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
49.157 |
100 |
0.493 |
| comGB | Staphylococcus aureus N315 |
49.157 |
100 |
0.493 |