Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CF59_RS21115 Genome accession   NZ_CP007393
Coordinates   4337748..4338215 (+) Length   155 a.a.
NCBI ID   WP_025210905.1    Uniprot ID   -
Organism   Escherichia coli strain ST2747     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4332748..4343215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF59_RS21065 (CF59_26955) rplP 4332858..4333268 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  CF59_RS21070 (CF59_26960) rpsC 4333281..4333982 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  CF59_RS21075 (CF59_26965) rplV 4334000..4334332 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  CF59_RS21080 (CF59_26970) rpsS 4334347..4334625 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  CF59_RS21085 (CF59_26975) rplB 4334642..4335463 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  CF59_RS21090 (CF59_26980) rplW 4335481..4335783 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  CF59_RS21095 (CF59_26985) rplD 4335780..4336385 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  CF59_RS21100 (CF59_26990) rplC 4336396..4337025 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  CF59_RS21105 (CF59_26995) rpsJ 4337058..4337369 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  CF59_RS21115 (CF59_27005) pilD 4337748..4338215 (+) 468 WP_025210905.1 A24 family peptidase Machinery gene
  CF59_RS21120 (CF59_27010) bfr 4338212..4338688 (-) 477 WP_000675515.1 bacterioferritin -
  CF59_RS21125 (CF59_27015) bfd 4338761..4338955 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  CF59_RS21130 (CF59_27020) tuf 4339138..4340322 (-) 1185 WP_000031783.1 elongation factor Tu -
  CF59_RS21135 (CF59_27025) fusA 4340393..4342507 (-) 2115 WP_000124703.1 elongation factor G -
  CF59_RS21140 (CF59_27030) rpsG 4342604..4343074 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17064.20 Da        Isoelectric Point: 8.1255

>NTDB_id=104166 CF59_RS21115 WP_025210905.1 4337748..4338215(+) (pilD) [Escherichia coli strain ST2747]
MDATLPFLILYACLSALLFFWDAKHSLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=104166 CF59_RS21115 WP_025210905.1 4337748..4338215(+) (pilD) [Escherichia coli strain ST2747]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATAGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368

Multiple sequence alignment