Detailed information NTG1041469

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACDZ78_RS08490
• Genome accession: NZ_CP168026
• Coordinates: 1674834..1675613 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain EM5 isolate
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1669834..1680613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDZ78_RS08470 (ACDZ78_08470)	trmFO	1670521..1671828 (+)	1308	WP_032871468.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACDZ78_RS08475 (ACDZ78_08475)	xerC	1671898..1672815 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACDZ78_RS08480 (ACDZ78_08480)	hslV	1672831..1673376 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACDZ78_RS08485 (ACDZ78_08485)	hslU	1673393..1674796 (+)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
ACDZ78_RS08490 (ACDZ78_08490)	codY	1674834..1675613 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACDZ78_RS08495 (ACDZ78_08495)	flgB	1675967..1676356 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACDZ78_RS08500 (ACDZ78_08500)	flgC	1676356..1676808 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
ACDZ78_RS08505 (ACDZ78_08505)	fliE	1676819..1677139 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACDZ78_RS08510 (ACDZ78_08510)	fliF	1677182..1678792 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
ACDZ78_RS08515 (ACDZ78_08515)	fliG	1678805..1679821 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACDZ78_RS08520 (ACDZ78_08520)	fliH	1679814..1680569 (+)	756	WP_053573438.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1041469 ACDZ78_RS08490 WP_003154263.1 1674834..1675613(+) (codY) [Bacillus velezensis strain EM5 isolate]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1041469 ACDZ78_RS08490 WP_003154263.1 1674834..1675613(+) (codY) [Bacillus velezensis strain EM5 isolate]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471