Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACDZ78_RS08460 Genome accession   NZ_CP168026
Coordinates   1667300..1668199 (+) Length   299 a.a.
NCBI ID   WP_053573437.1    Uniprot ID   -
Organism   Bacillus velezensis strain EM5 isolate     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1662300..1673199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ78_RS08440 (ACDZ78_08440) - 1662990..1664693 (+) 1704 WP_053573436.1 hypothetical protein -
  ACDZ78_RS08445 (ACDZ78_08445) - 1664690..1664971 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  ACDZ78_RS08450 (ACDZ78_08450) sucC 1665146..1666303 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  ACDZ78_RS08455 (ACDZ78_08455) sucD 1666332..1667234 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  ACDZ78_RS08460 (ACDZ78_08460) dprA 1667300..1668199 (+) 900 WP_053573437.1 DNA-processing protein DprA Machinery gene
  ACDZ78_RS08465 (ACDZ78_08465) topA 1668381..1670456 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  ACDZ78_RS08470 (ACDZ78_08470) trmFO 1670521..1671828 (+) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACDZ78_RS08475 (ACDZ78_08475) xerC 1671898..1672815 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32923.14 Da        Isoelectric Point: 8.7412

>NTDB_id=1041468 ACDZ78_RS08460 WP_053573437.1 1667300..1668199(+) (dprA) [Bacillus velezensis strain EM5 isolate]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAREAIFREIERKDPKLDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1041468 ACDZ78_RS08460 WP_053573437.1 1667300..1668199(+) (dprA) [Bacillus velezensis strain EM5 isolate]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCGGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGAAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712

Multiple sequence alignment