Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R8629_RS10700 Genome accession   NZ_AP028249
Coordinates   2357117..2357692 (+) Length   191 a.a.
NCBI ID   WP_317648736.1    Uniprot ID   -
Organism   [Ruminococcus] torques strain 17EGH124     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2352117..2362692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8629_RS10680 (Rumi2_21790) - 2352750..2353559 (-) 810 WP_009242467.1 MerR family transcriptional regulator -
  R8629_RS10685 (Rumi2_21800) - 2353651..2354226 (+) 576 WP_009242466.1 GNAT family N-acetyltransferase -
  R8629_RS10690 (Rumi2_21810) - 2354223..2355947 (+) 1725 WP_009242465.1 ABC transporter ATP-binding protein -
  R8629_RS10695 (Rumi2_21820) - 2355949..2357130 (+) 1182 WP_317648735.1 ABC transporter ATP-binding protein -
  R8629_RS10700 (Rumi2_21830) rcrQ 2357117..2357692 (+) 576 WP_317648736.1 ABC transporter ATP-binding protein Regulator
  R8629_RS10705 (Rumi2_21850) - 2357935..2358531 (+) 597 WP_009242463.1 hypothetical protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21436.50 Da        Isoelectric Point: 4.8491

>NTDB_id=104133 R8629_RS10700 WP_317648736.1 2357117..2357692(+) (rcrQ) [[Ruminococcus] torques strain 17EGH124]
MRFYEVNNGSIKVDGTKITDMPREELRDRFGMVLQDTWLFEGTIGENIGYAEDNMKKEKIVEAAKSACAHSFIKTLPGGY
DMTLSKGAENISQGERQLLTIARAIASDPEIMILDEATSNVDTHTEVLIQKAMAELMKGRTSFVIAHRLSTIRDADMILY
MEDGDIKEVGNHEELMKKNGKYAALYMSQFA

Nucleotide


Download         Length: 576 bp        

>NTDB_id=104133 R8629_RS10700 WP_317648736.1 2357117..2357692(+) (rcrQ) [[Ruminococcus] torques strain 17EGH124]
ATGCGCTTTTATGAGGTAAATAACGGATCGATCAAAGTGGACGGAACTAAGATCACGGATATGCCAAGGGAAGAACTGCG
CGACAGATTCGGTATGGTTCTTCAGGATACATGGCTGTTTGAAGGAACGATCGGAGAGAATATCGGATATGCCGAGGATA
ATATGAAGAAAGAGAAAATAGTAGAAGCCGCGAAATCGGCATGCGCCCACAGTTTCATCAAAACACTCCCGGGCGGATAC
GATATGACGCTTAGTAAAGGAGCGGAGAACATTTCGCAGGGAGAACGCCAGCTTCTGACGATCGCAAGAGCGATCGCTTC
CGATCCTGAGATCATGATCTTAGACGAGGCGACAAGTAACGTAGATACCCATACGGAAGTTCTTATTCAAAAAGCGATGG
CAGAACTGATGAAAGGACGCACAAGTTTTGTGATCGCCCACAGACTTTCTACGATCCGTGACGCAGATATGATCCTTTAT
ATGGAAGACGGAGATATCAAAGAAGTCGGAAATCATGAAGAACTGATGAAAAAGAACGGGAAATATGCGGCTCTTTATAT
GAGTCAGTTTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(3-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60

99.476

0.597
  rcrP Streptococcus mutans UA159

36.269

100

0.366

Multiple sequence alignment