Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AB8613_RS07845 Genome accession   NZ_CP167894
Coordinates   1744835..1745548 (+) Length   237 a.a.
NCBI ID   WP_372384776.1    Uniprot ID   -
Organism   Vibrio sp. BS-M-Sm-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1739835..1750548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8613_RS07830 (AB8613_07830) - 1740681..1743011 (+) 2331 WP_372384774.1 Tex family protein -
  AB8613_RS07835 (AB8613_07835) - 1743152..1743625 (-) 474 WP_146491984.1 ATP-dependent Lon protease -
  AB8613_RS07840 (AB8613_07840) bioH 1743965..1744741 (-) 777 WP_372384775.1 pimeloyl-ACP methyl ester esterase BioH -
  AB8613_RS07845 (AB8613_07845) comF 1744835..1745548 (+) 714 WP_372384776.1 ComF family protein Machinery gene
  AB8613_RS07850 (AB8613_07850) nfuA 1745659..1746243 (+) 585 WP_026084098.1 Fe-S biogenesis protein NfuA -
  AB8613_RS07855 (AB8613_07855) nudE 1746557..1747108 (+) 552 WP_060983216.1 ADP compounds hydrolase NudE -
  AB8613_RS07860 (AB8613_07860) cysQ 1747145..1747972 (+) 828 WP_372384777.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AB8613_RS07865 (AB8613_07865) - 1748076..1748855 (-) 780 WP_372384778.1 type II secretion system protein N -
  AB8613_RS07870 (AB8613_07870) - 1748857..1749345 (-) 489 WP_372384779.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27244.56 Da        Isoelectric Point: 9.0234

>NTDB_id=1040111 AB8613_RS07845 WP_372384776.1 1744835..1745548(+) (comF) [Vibrio sp. BS-M-Sm-2]
MLSDWLQKHTPRLVTPQCHLCKLDKSHSDAHPRWCDSCLNLFESVPRCQRCGLKTLLTVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLASRIEHPAPLITSVPLHWRRYIHRAFNQSQLLANYTAQELGVKDEVLFRRIR
STASQQGLTKSARLLNLKSAFTLRKQDFQGTVPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1040111 AB8613_RS07845 WP_372384776.1 1744835..1745548(+) (comF) [Vibrio sp. BS-M-Sm-2]
ATGTTATCTGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTGTGCAAGCTAGATAAGTCGCA
TAGCGATGCTCACCCTCGATGGTGTGATTCTTGTCTTAATCTCTTTGAGTCAGTTCCTCGCTGCCAACGATGTGGTTTAA
AAACACTGCTCACAGTAGAGCAGTGCGGACAGTGTTTATCTCAACCTCCACCTTGGCATCGTCTCTATTGCGTTGGGGAT
TACACCTTTCCAACAGCACGTTACATTCAACAAATGAAGTACGCCGATAAGTTTTGGTTTGCACGCGATCTGTCAAAGTT
ATTGGCTTCACGTATCGAGCACCCTGCTCCGCTGATCACCAGCGTACCTCTGCATTGGCGTCGATATATTCATCGTGCCT
TTAATCAAAGTCAGCTGCTTGCTAATTACACAGCTCAAGAACTTGGCGTTAAAGATGAGGTGCTGTTCCGTCGAATTCGC
TCAACCGCTTCTCAGCAAGGGCTGACTAAATCCGCACGCTTACTTAATCTAAAGAGCGCTTTTACGCTTCGAAAACAAGA
CTTTCAAGGAACTGTCCCTTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.508

99.578

0.553
  comF Vibrio campbellii strain DS40M4

50

100

0.515

Multiple sequence alignment