Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ACCQ10_RS14435 Genome accession   NZ_CP167862
Coordinates   3379634..3380671 (-) Length   345 a.a.
NCBI ID   WP_104543511.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1325     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3374634..3385671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ10_RS14410 (ACCQ10_14410) - 3374967..3375533 (-) 567 WP_039404799.1 YqgE/AlgH family protein -
  ACCQ10_RS14415 (ACCQ10_14415) - 3375842..3376408 (+) 567 WP_372361070.1 DNA-3-methyladenine glycosylase I -
  ACCQ10_RS14420 (ACCQ10_14420) - 3376445..3377344 (+) 900 WP_355604317.1 DUF72 domain-containing protein -
  ACCQ10_RS14425 (ACCQ10_14425) - 3377357..3378031 (-) 675 WP_039566430.1 YitT family protein -
  ACCQ10_RS14430 (ACCQ10_14430) pilU 3378343..3379473 (-) 1131 WP_005990431.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACCQ10_RS14435 (ACCQ10_14435) pilT 3379634..3380671 (-) 1038 WP_104543511.1 type IV pilus twitching motility protein PilT Machinery gene
  ACCQ10_RS14440 (ACCQ10_14440) - 3380998..3381690 (+) 693 WP_184384946.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACCQ10_RS14445 (ACCQ10_14445) proC 3381733..3382587 (+) 855 WP_104579947.1 pyrroline-5-carboxylate reductase -
  ACCQ10_RS14450 (ACCQ10_14450) - 3383143..3383562 (+) 420 WP_039404742.1 HU family DNA-binding protein -
  ACCQ10_RS14455 (ACCQ10_14455) - 3383695..3384297 (+) 603 WP_052210287.1 M23 family metallopeptidase -
  ACCQ10_RS14460 (ACCQ10_14460) - 3384389..3384691 (+) 303 WP_184438957.1 DUF3861 family protein -
  ACCQ10_RS14465 (ACCQ10_14465) - 3384770..3385291 (+) 522 WP_372361071.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38627.30 Da        Isoelectric Point: 6.6652

>NTDB_id=1039950 ACCQ10_RS14435 WP_104543511.1 3379634..3380671(-) (pilT) [Xanthomonas sp. NCPPB 1325]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1039950 ACCQ10_RS14435 WP_104543511.1 3379634..3380671(-) (pilT) [Xanthomonas sp. NCPPB 1325]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCATCGGACCTGCACCTGTCTGCAGGGCTGCCGCCGAT
GATCCGTGTCGATGGCGATGTCCGCCGCATCAATATTCCGGCGCTGGACCACAAGCAGGTGCATGCGCTGGTCTACGACA
TCATGTCGGACAAGCAGCGCCGCGATTACGAAGAATTCCTCGAGGTCGACTTTTCGTTCGAGATTCCGTCGCTGGCGCGC
TTCCGCGTCAATGCGTTCAACCAGAACCGCGGTGCCGGTGCGGTGTTCCGTACCATTCCCTCCGAAGTGCTGACGCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGCCTGATCCTGGTCACCGGCCCCACCGGGT
CGGGCAAGTCGACCACGCTGGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACTGTCGAGGAC
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGATACGCACGGCTTCAACGA
GGCGCTGCGCTCGGCGTTGCGCGAAGACCCGGACATCATCCTGGTGGGCGAATTGCGTGACCTGGAGACCATCCGCCTGG
CGCTCACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAGTCGCTGCGCGCGGTCATTTCGCAGGC
GCTGCTGAAGAAGGTGGGCGGCGGACGCACCGCCGCCTGGGAAATCATGGTCGGCACCCCGGCCATCCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCGGCGATCCAGACCGGCCAGCAGTACGGCATGCAGACGCTGGACCAGCATCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACGCGCAACCAGGCGCGTGAGTACGCGAAGGACAAGCGGATATTCGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.233

99.71

0.8
  pilT Acinetobacter baumannii D1279779

80.233

99.71

0.8
  pilT Acinetobacter baumannii strain A118

80.233

99.71

0.8
  pilT Pseudomonas stutzeri DSM 10701

79.07

99.71

0.788
  pilT Acinetobacter baylyi ADP1

78.488

99.71

0.783
  pilT Pseudomonas aeruginosa PAK

79.351

98.261

0.78
  pilT Legionella pneumophila strain Lp02

75

99.71

0.748
  pilT Legionella pneumophila strain ERS1305867

75

99.71

0.748
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394

Multiple sequence alignment