Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QUF32_RS14820 Genome accession   NZ_AP028128
Coordinates   3150244..3150945 (+) Length   233 a.a.
NCBI ID   WP_202643526.1    Uniprot ID   -
Organism   Vibrio fluvialis strain IDH05335     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3145244..3155945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF32_RS14800 (KKIDH5335_28450) - 3145679..3146341 (+) 663 WP_202641554.1 hypothetical protein -
  QUF32_RS14805 (KKIDH5335_28460) - 3146397..3148706 (+) 2310 WP_061057133.1 Tex family protein -
  QUF32_RS14810 (KKIDH5335_28470) - 3148788..3149258 (-) 471 WP_140229734.1 ATP-dependent Lon protease -
  QUF32_RS14815 (KKIDH5335_28480) bioH 3149387..3150157 (-) 771 WP_020329342.1 pimeloyl-ACP methyl ester esterase BioH -
  QUF32_RS14820 comF 3150244..3150945 (+) 702 WP_202643526.1 phosphoribosyltransferase family protein Machinery gene
  QUF32_RS14825 (KKIDH5335_28490) nfuA 3151046..3151633 (+) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  QUF32_RS14830 (KKIDH5335_28500) nudE 3151779..3152327 (+) 549 WP_020429366.1 ADP compounds hydrolase NudE -
  QUF32_RS14835 (KKIDH5335_28510) cysQ 3152351..3153178 (+) 828 WP_020429367.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QUF32_RS14840 (KKIDH5335_28520) - 3153208..3153966 (-) 759 WP_171933997.1 type II secretion system protein N -
  QUF32_RS14845 (KKIDH5335_28530) - 3153966..3154472 (-) 507 WP_024373337.1 type II secretion system protein M -
  QUF32_RS14850 (KKIDH5335_28540) gspL 3154482..3155693 (-) 1212 WP_202643525.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26363.40 Da        Isoelectric Point: 8.8535

>NTDB_id=103961 QUF32_RS14820 WP_202643526.1 3150244..3150945(+) (comF) [Vibrio fluvialis strain IDH05335]
MLTNRLQKNMFSWLRPSCQLCGLPLESHTTQSLCGACLDWYAPTTRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDY
RFPLSQSVHQLKYQRQFWQAQPLAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRL
ATPPQQGLNKAQRRRNLNQAFVLNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=103961 QUF32_RS14820 WP_202643526.1 3150244..3150945(+) (comF) [Vibrio fluvialis strain IDH05335]
ATGTTAACCAATCGACTTCAAAAAAACATGTTTTCGTGGCTGAGACCGTCGTGTCAGCTGTGCGGTTTGCCCCTTGAATC
GCATACCACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCACGCGCTGTGCTCGCTGCGGCCTGCCTT
GTGAAACCGCCACCGAGCAGTGTGGCCAATGCCTGACATCGCCGCCGCCGTGGCACAAGCTCTATTGTTTGGGCGATTAC
CGTTTTCCGCTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCGCTGGCCGGATTGTT
AGCCCCAAGAATTGTATCGCCCGCCCCACTGGTGACCTGCGTGCCGCTGCACTGGCGCCGCCATGCCTGGCGCGGTTTCA
ATCAAAGTGATGTTTTGGCACGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGTTTTCCCGTCGCCTG
GCCACCCCGCCGCAGCAAGGCCTGAACAAAGCTCAGCGCCGGCGCAATCTCAACCAAGCTTTTGTCTTAAACAGTGCGCC
GAGCCACAGACACATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATGCAATTTACTGCTTG
ATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

63.948

100

0.639
  comF Vibrio campbellii strain DS40M4

49.791

100

0.511

Multiple sequence alignment