Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACCO40_RS13625 Genome accession   NZ_CP167793
Coordinates   2653229..2655589 (-) Length   786 a.a.
NCBI ID   WP_114151384.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2648229..2660589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS13605 (ACCO40_13605) - 2648305..2649858 (+) 1554 WP_114151385.1 SH3 domain-containing protein -
  ACCO40_RS13610 (ACCO40_13610) dtd 2649885..2650325 (-) 441 WP_014114616.1 D-aminoacyl-tRNA deacylase -
  ACCO40_RS13615 (ACCO40_13615) relA 2650338..2652542 (-) 2205 WP_014114617.1 GTP diphosphokinase -
  ACCO40_RS13620 (ACCO40_13620) - 2652711..2653223 (-) 513 WP_014114618.1 adenine phosphoribosyltransferase -
  ACCO40_RS13625 (ACCO40_13625) recJ 2653229..2655589 (-) 2361 WP_114151384.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACCO40_RS13630 (ACCO40_13630) - 2655656..2655988 (-) 333 WP_079288037.1 lipopolysaccharide assembly LapA domain-containing protein -
  ACCO40_RS13635 (ACCO40_13635) - 2656066..2656563 (-) 498 WP_014114621.1 cation:proton antiporter regulatory subunit -
  ACCO40_RS13640 (ACCO40_13640) secDF 2656710..2658923 (-) 2214 WP_014114622.1 protein translocase subunit SecDF -
  ACCO40_RS13645 (ACCO40_13645) comN 2658962..2659258 (-) 297 WP_003222684.1 post-transcriptional regulator ComN -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88122.65 Da        Isoelectric Point: 4.9379

>NTDB_id=1039435 ACCO40_RS13625 WP_114151384.1 2653229..2655589(-) (recJ) [Bacillus spizizenii strain SHT-15]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESAKLFLHTKDADFYDPFEMKGMKEAADRIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTNRLGLKELVKLSGGDIGEANEETVGFQIAPRLNAVGRIEQADPAVHLLMSEDSFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQQGLDQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPDLRNRLNEIADNTLTEEDFIPVQEVDLVCGVEDITVESITEMNLLSPFGMLN
PKPHVLVENAVLEDVRKIGANKNHVKMTVRNESSQLDCVGFNKGELEEGIVPGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRMWEDTVSVLPSAKRAIVSFKEDSTTLLQTEDLRREVHVISSEDQAKAFDLDGAYIVLLDPPPSLDM
LARLLEGKTPERIYFIFLNQEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGVKKRDLTDSQTYQAKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=1039435 ACCO40_RS13625 WP_114151384.1 2653229..2655589(-) (recJ) [Bacillus spizizenii strain SHT-15]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCAAAGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGATCCTTTCGAAATGAAGGGCATGAAAGAAGCGGCAGATCGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTTCACACGCTGCAAAAGCT
GTCGGCTCAAGTTGATTTTTATATACCTGACCGCTTTAAAGAAGGATATGGCCCTAATGAACAGGCGTTTCGTTCGATTA
AAGAACGGGGCTTCTCTCTGATTATTACGGTTGATACAGGAATTGCCGCTGTGCATGAAGCGAAGGTGGCAAAGGAACTC
GGGCTGGATGTCATTATTACCGATCACCATGAGCCGGGACCGGAGCTTCCGGATGTCCATGCGATCGTCCACCCGAAGCA
GCCTGGCTGCACCTACCCGTTTAAAGAACTTGCCGGGGTCGGAGTTGCGTTTAAGCTTGCCCACGCTTTATTGGGCGAAC
TCCCGGATGAACTGCTTGACTTGGCGGCAATCGGCACCATTGCCGATCTTGTCCCGTTGCATGACGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTTCGTCGGACAAATCGGCTGGGCTTAAAAGAGCTGGTCAAGCTGTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACAGTCGGGTTCCAGATAGCACCAAGGCTGAATGCCGTCGGACGAATCGAACAGGCGGATC
CCGCTGTTCATTTGCTCATGTCAGAGGATTCGTTTGAAGCGGAAGAGCTCGCCGCTGAAATTGACCAGCTGAACAAAGAG
CGCCAAAAAATGGTCAGCAAAATGACGGATGAAGCAATTGAAATGGTTGAACAGCAAGGTCTCGATCAAACTGCAATCGT
CGTGGCCAAAGCCGGGTGGAATCCAGGAGTCGTCGGGATTGTGGCTTCAAAGCTTGTGGACCGTTTCTATCGTCCGGCCA
TTGTGCTTGGCATTGATGAAGAAAAAGGGATCGCTAAAGGTTCGGCCCGAAGCATCAGAGGCTTTAATTTATTCGAGAGT
CTTTCTGAATGCAGAGATATTCTTCCTCATTTCGGCGGCCATCCAATGGCTGCGGGGATGACGTTGAATGCCGAAGATGT
GCCGGATTTGCGAAACAGGCTGAATGAAATAGCAGACAATACGCTCACGGAAGAGGATTTTATTCCTGTACAGGAAGTCG
ATCTCGTCTGCGGTGTCGAGGACATTACGGTTGAAAGCATCACAGAAATGAACCTGCTGTCCCCATTTGGCATGCTGAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCTGTGCTGGAAGATGTCCGCAAGATCGGCGCTAATAAAAATCATGTGAAAAT
GACGGTCAGAAACGAGTCGTCTCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTCGAAGAAGGCATCGTCCCGGGTT
CAAGAATTTCAATTGTCGGTGAGATGTCTATCAACGAATGGAACAATAGAAAAAAACCGCAGTTAATGATTAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGATGTGGGAAGACACAGTTTCCGTCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAGACTGAAGATCTTCGCCGTGAAGTGCACGTCATCA
GCTCTGAAGATCAAGCGAAGGCGTTTGACCTTGATGGTGCATATATTGTATTGCTGGATCCGCCGCCTTCGTTGGACATG
CTCGCACGTTTGCTGGAAGGCAAGACGCCTGAGCGGATATATTTCATTTTTCTCAATCAAGAGGACCACTTTTTATCAAC
ATTTCCCGCAAGAGACCATTTTAAATGGTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGACGTAAAAAAACACGGAT
CAGAGCTTGCAAGACATAAAGGCTGGTCTGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTAGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGGTTAGCGGAGTAAAGAAACGCGACCTAACAGACTCACAAACATATCAGGCGAA
ACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

97.583

100

0.976

Multiple sequence alignment