Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACCO40_RS13550 Genome accession   NZ_CP167793
Coordinates   2636095..2638491 (-) Length   798 a.a.
NCBI ID   WP_061186663.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2631095..2643491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS13530 (ACCO40_13530) - 2633999..2635060 (-) 1062 WP_072566614.1 AI-2E family transporter -
  ACCO40_RS13535 (ACCO40_13535) - 2635158..2635289 (-) 132 WP_003225895.1 YrzQ family protein -
  ACCO40_RS13540 (ACCO40_13540) - 2635311..2635502 (-) 192 WP_003225893.1 hypothetical protein -
  ACCO40_RS13545 (ACCO40_13545) - 2635514..2636038 (-) 525 WP_079288029.1 PRC-barrel domain-containing protein -
  ACCO40_RS13550 (ACCO40_13550) recD2 2636095..2638491 (-) 2397 WP_061186663.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACCO40_RS13555 (ACCO40_13555) - 2638517..2639137 (-) 621 WP_242734162.1 tetratricopeptide repeat protein -
  ACCO40_RS13560 (ACCO40_13560) mnmA 2639223..2640338 (-) 1116 WP_079288032.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACCO40_RS13565 (ACCO40_13565) - 2640366..2641508 (-) 1143 WP_114151388.1 cysteine desulfurase family protein -
  ACCO40_RS13570 (ACCO40_13570) cymR 2641527..2641943 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  ACCO40_RS13575 (ACCO40_13575) - 2642145..2643410 (+) 1266 WP_041521021.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89198.84 Da        Isoelectric Point: 5.1652

>NTDB_id=1039434 ACCO40_RS13550 WP_061186663.1 2636095..2638491(-) (recD2) [Bacillus spizizenii strain SHT-15]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEQLIIHTQSLLNQSAREGQHITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPVVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASKVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVNFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSLQIEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1039434 ACCO40_RS13550 WP_061186663.1 2636095..2638491(-) (recD2) [Bacillus spizizenii strain SHT-15]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAGGGGACAGTCAACACAGTCATCTATCATAA
CGACACCAATTTATATACGGTTCTGAAAGTAAAAGTCACAGAGACCTCCGAAGCGATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATTGTAACCCATCCAAAATTCGGGCTC
CAATTTCAGGCGGAGCATTTCAAAAAGGAGATCCCGACGACTAAGGAAGGCATCATTCAGTATTTATCGAGTGATTTGTT
CGAGGGAATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGTGCCATTAATAAAATTTTGGCCGACG
CATCAGTGCTTTATGATGTTCCGAGACTGTCAAAAAAGAAAGCTGATACGTTAGCCGGCGCTTTGCAGCGGCATCAGGGA
CTTGAGCAAATCATGATTTCCCTGAATCAGTTCGGCTTTGGCCCTCAGCTGTCTATGAAAATCTATCAGGCCTATGAATC
CGAGACGCTTGAAAAGATTCAGGAAAACCCTTATCAGCTTGTGAAAGATGTAGAAGGGATTGGGTTTGGGAAAGCGGATG
AGCTTGGCAGCAGAATGGGACTTTCGGGTAATCATCCTGAGCGGGTAAAAGCCGCCATTTTGTACACGCTTGAAACGACT
TGTCTGTCAGAAGGGCATACGTACATAGAAACGGAGCAGCTGATTATCCACACCCAATCACTGTTGAACCAGTCAGCAAG
GGAAGGACAGCACATCACAGAAATGGATGCCGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ACGGCCGCTGTTATTTTCCATCGCTGTTTTACGCAGAACAAAACGTTGCAAAGCGTGTGAAACATATCGCAAGCCAAACC
GAATATGATGACCAGTTTCCTGAATCAGAATTTCTGCTCGCTTTAGGAGAACTGGAAGAACGGATGAACGTTCAGTATGC
CCCGAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCACCGATGCTTCTTTTAACGGGAGGCCCGGGAACAGGGAAAA
CGACGGTAATCAGAGGAATTGTCGAACTATACGGAGAGCTTCATGGCGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGGTTGTATTGGCCGCACCGACAGGAAGAGCGGCGAAACGGATGAGTGAATCAACGGGCCTTCCGGCAGT
CACGATACACAGGCTGCTTGGCTGGAACGGCGCTGAAGGCTTTACCCATACAGAGGATCAGCCGATCGAAGGAAAGCTGT
TAATTATCGATGAAGCCAGCATGCTTGATATATGGCTGGCGAACCACTTGTTCAAGGCGATCCCTGATCATATTCAAATC
ATCATTGTCGGAGATGAAGATCAACTGCCTTCTGTCGGTCCGGGCCAAGTGCTGAGAGACCTTTTGGCATCTAAGGTAAT
TCCGACTGTGAGACTGACAGACATCTACCGCCAGGCTGAGGGGTCATCAATCGTTGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCGACGAAGGACCGTTCCTTTATTCGCTGCGGTGGCTCGCAAATAAAAGAAGTA
GTCGAAAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATACAGGTTCTCGCCCCGATGTACAGAGG
GAAAGCAGGCATCAATGAACTGAACGTGATGCTGCAGGACATCTTGAATCCTCCTAAAGAAAAACGGAGAGAATTGAAGT
TCGGAGATGTTGTCTACAGAACGGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGTTCAATGGAGAT
ATTGGCGAAATCACGTCGATATTTTATGCGAAGGAAAATACAGAAAAAGAAGACATGGCCGTTGTTAATTTTGACGGCAA
TGAAATGACATTTACGAAAAAAGATTTTAACCAGTTTACTCATGCGTATTGCTGCTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTACTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACA
AGAGCAAAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTAAAAAATAATGACGCAACTGTCAG
ACAGACTTCCTTGAAAAACAGGCTGTCATTACAGATTGAAGAAATGGATGCCGAGCTTGAGGCTTTGCAAAAAGAGCTCC
CGTTCAGTGTGCACGATGCCAATATTGGTATGGAAGGCATTACCCCATTCGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

AAA domain (AAA_30)

(346-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

98.745

99.875

0.986

Multiple sequence alignment