Detailed information NTG1039414

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACCO40_RS08920
• Genome accession: NZ_CP167793
• Coordinates: 1715992..1716771 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus spizizenii strain SHT-15
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1710992..1721771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCO40_RS08900 (ACCO40_08900)	trmFO	1711685..1712992 (+)	1308	WP_014113783.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACCO40_RS08905 (ACCO40_08905)	xerC	1713060..1713974 (+)	915	WP_014113784.1	tyrosine recombinase XerC	-
ACCO40_RS08910 (ACCO40_08910)	clpQ	1713987..1714532 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
ACCO40_RS08915 (ACCO40_08915)	hslU	1714549..1715952 (+)	1404	WP_014113785.1	HslU--HslV peptidase ATPase subunit	-
ACCO40_RS08920 (ACCO40_08920)	codY	1715992..1716771 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACCO40_RS08925 (ACCO40_08925)	flgB	1717153..1717542 (+)	390	WP_014113786.1	flagellar basal body rod protein FlgB	-
ACCO40_RS08930 (ACCO40_08930)	flgC	1717542..1717994 (+)	453	WP_072182136.1	flagellar basal body rod protein FlgC	-
ACCO40_RS08935 (ACCO40_08935)	fliE	1718006..1718326 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
ACCO40_RS08940 (ACCO40_08940)	fliF	1718372..1719982 (+)	1611	WP_326198935.1	flagellar basal-body MS-ring/collar protein FliF	-
ACCO40_RS08945 (ACCO40_08945)	fliG	1719995..1721011 (+)	1017	WP_003220860.1	flagellar motor switch protein FliG	-
ACCO40_RS08950 (ACCO40_08950)	fliH	1721004..1721756 (+)	753	WP_061187460.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=1039414 ACCO40_RS08920 WP_003220850.1 1715992..1716771(+) (codY) [Bacillus spizizenii strain SHT-15]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1039414 ACCO40_RS08920 WP_003220850.1 1715992..1716771(+) (codY) [Bacillus spizizenii strain SHT-15]
ATGGCTTTATTACAAAAAACACGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAGCTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAAAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGTATGGAGATCCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGTAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGTGAACTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTCGTTGCAAGTAAAATCGCTGACCGCGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAAAGCGCGGGTGTTATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAATAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467